TABLE 3.
Fitting statistics of CD155 model into EM density
| Map |
sumfa
|
avgdsb (Å) | Distancec (Å)
|
|||||
|---|---|---|---|---|---|---|---|---|
| D1 | D2 | D3 | Asn105 | Asn120 | Asn188 | Asn237 | ||
| G-CD155-PV1 | 51.4 | 41.7 | 18.6 | 11.4 | 12.8 | 16.7 | 6.2 | 9.8 |
| G-CD155-PV1 (old) | 50.2 | 40.7 | 18.0 | 12.7 | 13.4 | 19.0 | 8.8 | 9.6 |
| D-CD155-PV1 | 57.8 | 38.8 | 14.8 | |||||
| G-CD155-PV2 | 56.4 | 42.3 | 23.7 | 14.3 | 19.8 | 9.1 | 14.0 | |
| D-CD155-PV2 | 55.7 | 40.4 | 20.4 | |||||
| G-CD155-PV3 | 55.0 | 44.0 | 22.6 | 14.0 | 14.3 | 10.0 | 17.6 | |
| D-CD155-PV3 | 54.4 | 43.6 | 22.3 | |||||
a
sumf is the average density at all Cα atoms when the maximum height of the map is set to 100. D1, D2, and D3 show the value of sumf for each separate domain.
b
avgds is the average distance between the observed carbohydrate sites to the presumed Cα atoms of the glycosylated residue.
c
The Asn105, Asn120, Asn188, and Asn237 columns list individual distances for each glycosylated site from the given residue.