TABLE 2.
Other papillomavirus L2 expression constructs used in this study
Virus | L2 amino acids incor- porated | NCBI reference no.a | Primer sequence (5′ to 3′)b
|
|
---|---|---|---|---|
Forward | Reverse | |||
HPV6b | 314-459 | NC_001355 | AATTCCGGATCCGGGGCCCGCATTCATTATTTTTA | AATTCCGCGGCCGCCTAGGCCGCCACATCTG |
HPV16 | 321-473 | NC_001526 | AATTCCGGATCCGGTGCTAAGGTACATTATTATTA | AATTCCGCGGCCGCCTAGGCAGCCAAAGAGAC |
HPV33 | 319-467 | NC_001528 | AATTCCGGATCCGGAGCTAGAATACATTATTATC | AATTCCGCGGCCGCCTAGGCCGCCACACGGAC |
HPV1a | 347-507 | NC_001356 | AATTCCGGATCCGGGCCACAAAGCCATTTTTAC | AATTCCGCGGCCGCTTAAAAAAAAAAATGTTTGCG |
HPV5 | 376-518c | NC_001531 | AATCCGGATCCGGGTCGCAAGTCCATTTTTAC | AATTCCGCGGCCGCTCACAAATATTTTCTT |
HPV12 | 360-518 | NC_001577 | AATTCCGGATCCGGATCACAGGTTCATTTTTATAG | AATTCCGCGGCCGCTCACAAATATTTTCTT |
COPV1 | 360-513 | NC_001619 | AATTCCGGATCCGGGCCACAAAGCCATTTTTAC | AATTCCGCGGCCGCTTAAAAAAAAAAATGTTTGCG |
BPV1 | 316-469 | NC_001522 | AATTCCGGATCCGGACCACAGCTACATGTCAGG | CTCGAGTTAGGCATGTTTCCGTTTTTTTCGTTTC |
Sequences are the same as those given in the NCBI reference with the exception of the HPV5 isolate. The relevant amino acid changes within the putative L1 binding domain of HPV5 are indicated on Fig. 5.
Restriction sites within the primer are underlined.
Although primers were designed such that HPV5 amino acids 360 to 518 would be incorporated, only amino acids 376 to 518 are present due to the presence of a cryptic BamHI site at position 5472 in the HPV5 isolate used for PCR amplification.