Table 4.
d | No. of clusters
|
P value | No. of clustered genes
|
P value | ||
---|---|---|---|---|---|---|
OBS | RE | OBS | RE | |||
Up-regulation in 48R | ||||||
1 kb | 2 | 0.11 | <0.001 | 4 | 0.21 | <0.001 |
2 kb | 5 | 0.27 | <0.001 | 10 | 0.55 | <0.001 |
5 kb | 8 | 0.68 | <0.001 | 16 | 1.36 | <0.001 |
10 kb | 12 | 1.15 | <0.001 | 24 | 2.31 | <0.001 |
20 kb | 14 | 1.90 | <0.001 | 29 | 3.81 | <0.001 |
50 kb | 16 | 3.75 | <0.001 | 34 | 7.53 | <0.001 |
100 kb | 21 | 6.64 | <0.001 | 44 | 13.4 | <0.001 |
200 kb | 24 | 11.2 | <0.001 | 53 | 22.8 | <0.001 |
500 kb | 33 | 22.6 | 0.004 | 72 | 46.9 | <0.001 |
1 Mb | 45 | 35.6 | 0.016 | 100 | 75.6 | 0.002 |
2 Mb | 59 | 52.1 | 0.054 | 144 | 115.7 | 0.001 |
5 Mb | 76 | 73.0 | 0.192 | 209 | 179.6 | <0.001 |
Up-regulation in 184 | ||||||
1 kb | 2 | 0.05 | <0.001 | 4 | 0.09 | <0.001 |
2 kb | 2 | 0.08 | <0.001 | 4 | 0.15 | <0.001 |
5 kb | 4 | 0.21 | <0.001 | 8 | 0.42 | <0.001 |
10 kb | 5 | 0.33 | <0.001 | 10 | 0.66 | <0.001 |
20 kb | 6 | 0.60 | <0.001 | 12 | 1.21 | <0.001 |
50 kb | 7 | 1.11 | <0.001 | 14 | 2.23 | <0.001 |
100 kb | 7 | 1.83 | <0.001 | 14 | 3.69 | <0.001 |
200 kb | 8 | 3.23 | 0.008 | 16 | 6.56 | 0.008 |
500 kb | 12 | 6.92 | 0.009 | 24 | 14.1 | 0.016 |
1 Mb | 18 | 11.5 | 0.006 | 37 | 23.7 | 0.009 |
2 Mb | 22 | 18.4 | 0.123 | 46 | 39.1 | 0.162 |
5 Mb | 29 | 30.4 | 0.610 | 69 | 68.4 | 0.447 |
The occurrence of perturbed gene expression in two or more genes located within the distance shown defined a chromosomal cluster. Parameters are as indicated for Table 2.