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. 2003 Apr;47(4):1382–1390. doi: 10.1128/AAC.47.4.1382-1390.2003

TABLE 1.

PCR primers used in this work

Forward and reverse primers Sequence 5′-3′ Amplicon (size in bp) Position Remark Reference
int1f imp12 CAG AAG ACG GCT GCA CTG AA AGT GTG TCC TGG GCC TGG blaIMP-4 upstream (1,833) −1359 to +474 (blaIMP-4 ATG) Characterization of the upstream region of blaIMP-4 in strain 74510 This work
imp11 int3c ATG AGC AAA GTT ATC TGT ATT CT AAA GCA GTC TTG ACC TGA blaIMP-4 downstream (2,812) +741 (blaIMP-4 ATG) to 2071 downstream of blaIMP-4 Characterization of the downstream region of blaIMP-4 in strain 74510 This work
int2a int6b AAC CGA GGA TGC GAA CCA CT CCG AGC CGC TCG TAT AG intI1-arr-2-aacA4-3′CS (3,602) +382 (intI1 ATG) to +482 (orf5 ATG) Characterization of the regions flanking arr-2 in strain 74510 This work
int2a imp12 AAC CGA GGA TGC GAA CCA CT AGT GTG TCC TGG GCC TGG intI1-blaIMP-4 (1,008) +382 (intI1 ATG) to + 474 (blaIMP-4 ATG) Combining with RFLP for detection of the intI1-blaIMP-4 sequencea This work
int1b aac61bB CAT CCA AGC AGC AAG CGC GTT A ACC CCG GIT TCT CGT AGC AT 5′ CS-arr-2-aacA4 (1,182) −131 (arr-2 ATG) to +460 (aacA4 ATG) Combining with RFLP for the detection of the 5′ CS-arr-2-aacA4 sequencea This work
int1e int1c TCG TAG AGA CGT CGG AAT GG CCG AGG CAT AGA CTG TAC AA Class 1 integrase gene intI1 (965) −40 to +925 (intI1 ATG) For detection of the intI1 gene 27
5cs 3cs GGC ATC CAA GCA GCA AG AAA GCA GAC TTG ACC TGA Entire integron (variable) Variable For confirmation of the presence of class 1 integron 27
ardra1 ardra2 TGG CTC AGA TTG AAC GCT TAC CTG TTA CGA CTT CA 16S rRNA gene (1,500) Variable ARDRA of acinetobacter for genomic DNA group determination 11
BL BR TAT GAG TGG CTA AAT CGA T CCC GCT TTC TCG TAG CA aacA4 (395) +115 to +509 (aacA4 ATG) For detection of the aacA4 gene 39
aph1 aph2 ATA CAG AGA CCA CCA TAC AGT GGA CAA TCA ATA ATA GCA AT aph(3′)-VIa (234) +140 to +374 [aph(3′)-VIa ATG] For detection of the aph(3′)-VIa gene 60
a

See Table 2 for the expected sizes of the restriction fragments.

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