TABLE 1.
PCR primers used in this work
Forward and reverse primers | Sequence 5′-3′ | Amplicon (size in bp) | Position | Remark | Reference |
---|---|---|---|---|---|
int1f imp12 | CAG AAG ACG GCT GCA CTG AA AGT GTG TCC TGG GCC TGG | blaIMP-4 upstream (1,833) | −1359 to +474 (blaIMP-4 ATG) | Characterization of the upstream region of blaIMP-4 in strain 74510 | This work |
imp11 int3c | ATG AGC AAA GTT ATC TGT ATT CT AAA GCA GTC TTG ACC TGA | blaIMP-4 downstream (2,812) | +741 (blaIMP-4 ATG) to 2071 downstream of blaIMP-4 | Characterization of the downstream region of blaIMP-4 in strain 74510 | This work |
int2a int6b | AAC CGA GGA TGC GAA CCA CT CCG AGC CGC TCG TAT AG | intI1-arr-2-aacA4-3′CS (3,602) | +382 (intI1 ATG) to +482 (orf5 ATG) | Characterization of the regions flanking arr-2 in strain 74510 | This work |
int2a imp12 | AAC CGA GGA TGC GAA CCA CT AGT GTG TCC TGG GCC TGG | intI1-blaIMP-4 (1,008) | +382 (intI1 ATG) to + 474 (blaIMP-4 ATG) | Combining with RFLP for detection of the intI1-blaIMP-4 sequencea | This work |
int1b aac61bB | CAT CCA AGC AGC AAG CGC GTT A ACC CCG GIT TCT CGT AGC AT | 5′ CS-arr-2-aacA4 (1,182) | −131 (arr-2 ATG) to +460 (aacA4 ATG) | Combining with RFLP for the detection of the 5′ CS-arr-2-aacA4 sequencea | This work |
int1e int1c | TCG TAG AGA CGT CGG AAT GG CCG AGG CAT AGA CTG TAC AA | Class 1 integrase gene intI1 (965) | −40 to +925 (intI1 ATG) | For detection of the intI1 gene | 27 |
5cs 3cs | GGC ATC CAA GCA GCA AG AAA GCA GAC TTG ACC TGA | Entire integron (variable) | Variable | For confirmation of the presence of class 1 integron | 27 |
ardra1 ardra2 | TGG CTC AGA TTG AAC GCT TAC CTG TTA CGA CTT CA | 16S rRNA gene (1,500) | Variable | ARDRA of acinetobacter for genomic DNA group determination | 11 |
BL BR | TAT GAG TGG CTA AAT CGA T CCC GCT TTC TCG TAG CA | aacA4 (395) | +115 to +509 (aacA4 ATG) | For detection of the aacA4 gene | 39 |
aph1 aph2 | ATA CAG AGA CCA CCA TAC AGT GGA CAA TCA ATA ATA GCA AT | aph(3′)-VIa (234) | +140 to +374 [aph(3′)-VIa ATG] | For detection of the aph(3′)-VIa gene | 60 |
See Table 2 for the expected sizes of the restriction fragments.