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. 2003 Apr;47(4):1220–1227. doi: 10.1128/AAC.47.4.1220-1227.2003

TABLE 2.

Sequences and melting temperatures (Tm) of primers used in RT-PCR

Primer Sequence Tm (°C)
RTA3-F 5′-CGAAAGCAAACCAAGTCCAT-3′ 54.9
RTA3-R 5′-TACCAATCATTGCTGCATCC-3′ 54.3
IPF3121-F 5′-TTGCCACCACCTAATCATCA-3′ 55.3
IPF3121-R 5′-CAACAGGTTCCGTTTGTGTG-3′ 55.6
DDR48-F 5′-TTTCGGTTTCGGTAAAGACG-3′ 54.1
DDR48-R 5′-TGAGTCGGTCTTGGAGGAAC-3′ 57.2
EBP1-F 5′-GCTTATGTCCCAACCACCAG-3′ 56.7
EBP1-R 5′-CTGATGGCGCAATAAGAGGT-3′ 56.1
CDR1-F 5′-GGCAATTAGTCAAGACTCTTCTTCAG-3′ 57.2
CDR2-F 5′-CAGCTAGACGAAAAGCCATGG-3′ 57.1
CDR-Ra 5′-CACCTGGTCTCATAATGGCATC-3′ 56.7
IFD1-F 5′-CGACAATGGCTTCCGTACTT-3′ 56.2
IFD4-F 5′-GATTGGGATCCAGTTGGAGA-3′ 55.0
IFD5-F 5′-GGGAAGATTTTGATCCTGTTGATAG-3′ 55.2
LPG20-Rb 5′-CACCAGCAATTGGAATCACA-3′ 54.7
IFD7-F 5′-AGATGGTTTGGGTGAAGTCG-3′ 56.1
IFD7-R 5′-CACCGGCAATTGGGACAACTCC-3′ 62.1
GRP2-F 5′-ACATACCGCATCTCCATTCC-3′ 55.6
GRP2-R 5′-TGGAACCAACATAACCAGCA-3′ 55.7
DPP1-F 5′-TCAACCATTTGCACGACAAT-3′ 54.6
DPP1-R 5′-TCAGGAGTTCCCTTTTGTGG-3′ 55.7
CRD2-F 5′-GCTTGTTCTGCTGCTCAATG-3′ 55.8
CRD2-R 5′-TTTCACCATCTCTAGTACCATCACA-3′ 57.1
INO1-F 5′-GATTTCAAGGCCAAAAACGA-3′ 53.0
INO1-R 5′-TTTGATACCAGCATCGACCA-3′ 55.2
IPF1222-F 5′-CTCCAAAGGCAGTCCATCAT-3′ 55.9
IPF1222-R 5′-TTGTGTTAGCATTGCCGTGT-3′ 56.8
OPI3-F 5′-GGCACAAAATTTCCCACAAT-3′ 53.4
OPI3-R 5′-GCAAACAATGCAATGGCTAA-3′ 53.7
MDR1-F 5′-TTTTTGGGTGGATTCTTTGC-3′ 53.0
MDR1-R 5′-CGGTGATGGCTCTCAATCTT-3′ 55.8
18S rRNA-F 5′-GCC AGC GAG TAT AAG CCT TG-3′ 56.7
18S rRNA-R 5′-AGG CCT CAC TAA GCC ATT CA-3′ 57.3
a

The CDR-R primer is used with both the CDR1-F and CDR2-F primers.

b

The LPG20-R primer is used with IFD1-F, IFD4-F, and IFD5-F primers.