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. 2006 Jun;173(2):1047–1056. doi: 10.1534/genetics.106.056259

Figure 2.

Figure 2.

Ogre elements identified in V. pannonica. (A) Structure of the full-length element Ogre-VP1. LTRs are depicted as open arrows in solid boxes. The open reading frames ORF1, ORF2, and ORF3 are represented by open boxes marked with corresponding numbers. Lightly shaded boxes indicate regions separating individual ORFs and darkly shaded boxes represent putative 5′- and 3′-UTRs. Lines above the scheme show positions of probes used for hybridizations. The horizontal solid arrows mark positions and directions (5′ → 3′) of primers used for RT–PCR experiments. Positions of stop codons in three reading frames of the Ogre-VP1 sequence are shown as vertical lines below the scheme. The vertical arrow indicates the frameshift in the ORF3. (B) Structure of the clone VP-cosC6 (GenBank accession no. AY936172) showing positions and orientation of Ogre-VP1 (solid), Ogre-VP2 (dark shading), and Ogre-VP3 (light shading) elements. Open arrows represent LTRs.