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. 2006 Jul;173(3):1705–1723. doi: 10.1534/genetics.105.054502

TABLE 2.

Descriptive statistics and estimates of nucleotide sequence diversity for a common set of 25 samples at 18 loci in wild barley

Gene n h Aligned length, bp Sp Inline graphicW × 10−3 Inline graphicπ ×10−3 T Wall's B Rm Rh Rs Rl Ru
H. vulgare ssp. spontaneum
Adh1 25 11 1362 6 2.73 (±1.11) 2.07 −0.926 0.154 0 0 0 0 0
Adh2 25 19 1980 14 4.84 (±1.72) 3.19 −1.289 0.057 2 2 2 2 2
Adh3 25 21 1873 81 15.42 (±5.11) 22.42 1.734 0.423 2 2 5 5 6
α-amy1 25 5 856 3 3.10 (±1.36) 1.27 −1.948 0.222 0 0 0 0 0
Cbf3 28 10 1514 22 4.52 (±1.64) 4.43 −0.071 0.160 2 3 3 3 3
Dhn1 24 16 1538 37 18.70 (±6.36) 13.18 −1.161 0.056 7 11 11 11 17
Dhn4 24 12 1072 31 14.13 (±4.97) 17.18 0.831 0.381 5 6 6 6 8
Dhn5 24 19 1088 25 11.70 (±4.09) 10.81 −0.295 0.239 3 7 7 7 8
Dhn7 28 19 1389 50 16.72 (±6.21) 14.01 −0.622 0.185 6 11 11 13 16
Dhn9 25 12 1011 9 4.90 (±1.91) 3.91 −0.725 0.118 1 1 1 1 1
Faldh 25 11 1091 17 5.67 (±2.12) 5.71 −0.405 0.333 0 0 0 1 1
G3pdh 26 13 2010 45 7.93 (±2.64) 9.90 0.823 0.536 1 1 1 3 3
ORF1 27 17 1533 22 6.16 (±2.16) 5.18 −1.129 0.196 1 1 1 1 1
5′Pepc 25 6 2019 1 0.66 (±0.35) 0.23 −1.841 0 0 0 0 0
Pepc 25 8 1154 3 1.15 (±0.61) 1.14 −0.023 0 0 0 0 0
Stk 26 15 1057 20 9.29 (±3.27) 6.77 −1.019 0.111 1 3 3 3 3
Vrn1 19 12 1262 10 3.79 (±1.48) 3.57 −0.216 0.077 2 2 3 2 3
Waxy 28 22 1232 25 9.12 (±3.12) 7.86 −0.521 0.238 6 12 12 12 16
External H. vulgare ssp. spontaneum data
GSP 33 25 1802 38 19.43 (±5.89) 7.52 −2.326 0.164 9 9 13 10 13
hina 33 22 1475 44 10.87 (±3.45) 10.00 −0.295 0.067 9 10 13 9 13
hinb 33 26 3373 134 14.08 (±4.29) 9.16 −1.331 0.080 6 7 10 7 8
D. melanogaster
bagpipe 27 12 1402 27 6.16 (±2.12) 7.23 0.647 0.300 6 7 9 9 10
CG3588 44 26 1332 34 11.64 (±3.45) 8.23 −1.043 0.050 13 13 30 31
Est6 50 22 2332 77 13.00 (±3.77) 11.30 −0.463 0.178 15 15 20 21 31
Idgf1 20 18 1958 72 11.61 (±4.03) 14.66 1.073 0.132 15 15 20 23 35
Idgf3 20 17 2401 48 8.33 (±2.95) 8.76 0.209 0.275 11 11 16 16 21
Notch5′ 50 29 1480 24 8.38 (±2.55) 4.51 −1.598 0.096 9 13 27 24
polehole 22 18 2259 40 6.69 (±2.31) 6.69 −0.001 0.212 13 13 20 20 31
tinman 29 16 2428 26 4.29 (±1.47) 5.15 0.734 0.316 2 2 2 2 2
vermilion 71 36 2081 68 11.35 (±3.00) 8.84 −0.757 0.047 27 27 60 56
yEst6 22 12 2332 72 10.64 (±3.64) 11.97 0.502 0.438 4 4 4 4 6
D. pseudoobscura
Adh 139 118 4736 217 2.66 (±6.14) 11.72 −1.845 0.0424 54 61 155
D. simulans
Notch 3′ 22 16 1578 26 5.91 (±2.16) 6.92 0.664 0.091 9 9 17 17 24
Notch 5′ 22 20 1411 28 7.71 (±2.79) 8.03 0.162 0.054 10 10 19 19 27
Z. mays
Adh 25 11 1435 40 11.93 (±4.07) 12.58 0.210 0.138 8 8 9 9 11
Glb1 23 20 1196 50 25.19 (±8.36) 19.87 −0.843 0.082 14 14 21 21 32
Umc128 23 15 1011 23 15.45 (±5.68) 19.43 0.979 0.207 5 5 7 7 9
Umc230 22 12 1243 17 17.79 (±6.56) 12.79 −1.082 0.0333 3 3 4 4 5
Zfl2 29 28 4205 82 16.73 (±5.22) 10.53 −1.439 0.115 24 26 50 44

See Table 1 for symbols used. For Inline graphicW, standard deviation is shown, based on no recombination.