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. 2003 Apr 1;31(7):1821–1829. doi: 10.1093/nar/gkg277

Figure 3.

Figure 3

Similarity peaks in the Cystoviridae and Flaviviridae RdRps. The Cystoviridae sequences were of Phi6 (M17461) (34), Phi8 (AF226851) (35) and Phi13 (AF261668) (36); the Flaviviridae sequences were of HCV (D84264) (78), hepatitis G virus (AB021287) (30), hepatitis GB virus (U94421) (31), and bovine viral diarrhea virus (M31182) (79). PLOTSIMILARITY was run with a window of 10 amino acids. PILEUP was run with a similarity matrix of Blosum30 for both groups of viruses. Gap weight was set at 5 and gap length weight at 1 for the Flaviviridae and at the default values for the Cystoviridae.