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. 2003 Mar 15;31(6):1605–1613. doi: 10.1093/nar/gkg259

Table 1. Identification of the platinum chelates formed by reaction of cis-[Pt(NH3)2(H2O)2]2+ 1 with AG3(T2AG3)3 I and (T2AG3)4 IIa.

Analysis of the platinated fragments from gel bands 1.1 and 1.2 (Fig. 2) Platinated sitesb
    A1 G10 A13 G22
% Platinated G 1.1 (I)   80   80
(DMS) 1.2 (I/IIb)   80   80
% Platinated A– 1.1 (I) <15   <15  
N7 (DEPC)c 1.2 (I/IIb) <15   <15  
3′-Exonuclease 1.1 (I) A1 and G2d G10 A13 and G14d G22
stopd 1.2 (I/IIb) A1 and G2d G10 A13 and G14d G22
‘n-mer like’ migration of the platinated fragment after digestion 1.1 (I) 1.2 (I/IIb) 9 9/11 9–10e 9–10e/12 17 16/18 20 21/23
Base position in 1.1 (I) 5′ 3′ 5′ 3′
the chelate 1.2 (I/IIb) 5′ 3′ 5′ 3′
Conclusion 1.1 (I) One bis-chelate A1–G10/A13–G22    
  1.2 (I/IIb) Two chelates A1–G10 or A13–G22    

aSee text for step-by-step analysis.

bII is a 24mer but for the sake of comparison we have adopted the same base numbering as that of the 22mer I (Fig. 1). However, the size of the fragments is the actual one.

cDEPC/piperidine treatment does not detect A–N1 binding. The lower limit of reliable quantification by gel analysis is 15%.

dFor some adducts, the 3′-exonuclease digestion exhibits a 1 nt premature arrest. This is easily detected thanks to the assignment of the platination sites by chemical digestion.

eThe two values result from the non-identity of the migration scales of the free and platinated fragments.