Table 1. Identification of the platinum chelates formed by reaction of cis-[Pt(NH3)2(H2O)2]2+ 1 with AG3(T2AG3)3 I and (T2AG3)4 IIa.
Analysis of the platinated fragments from gel bands 1.1 and 1.2 (Fig. 2) | Platinated sitesb | ||||
---|---|---|---|---|---|
A1 | G10 | A13 | G22 | ||
% Platinated G | 1.1 (I) | 80 | 80 | ||
(DMS) | 1.2 (I/IIb) | 80 | 80 | ||
% Platinated A– | 1.1 (I) | <15 | <15 | ||
N7 (DEPC)c | 1.2 (I/IIb) | <15 | <15 | ||
3′-Exonuclease | 1.1 (I) | A1 and G2d | G10 | A13 and G14d | G22 |
stopd | 1.2 (I/IIb) | A1 and G2d | G10 | A13 and G14d | G22 |
‘n-mer like’ migration of the platinated fragment after digestion | 1.1 (I) 1.2 (I/IIb) | 9 9/11 | 9–10e 9–10e/12 | 17 16/18 | 20 21/23 |
Base position in | 1.1 (I) | 5′ | 3′ | 5′ | 3′ |
the chelate | 1.2 (I/IIb) | 5′ | 3′ | 5′ | 3′ |
Conclusion | 1.1 (I) | One bis-chelate A1–G10/A13–G22 | |||
1.2 (I/IIb) | Two chelates A1–G10 or A13–G22 |
aSee text for step-by-step analysis.
bII is a 24mer but for the sake of comparison we have adopted the same base numbering as that of the 22mer I (Fig. 1). However, the size of the fragments is the actual one.
cDEPC/piperidine treatment does not detect A–N1 binding. The lower limit of reliable quantification by gel analysis is 15%.
dFor some adducts, the 3′-exonuclease digestion exhibits a 1 nt premature arrest. This is easily detected thanks to the assignment of the platination sites by chemical digestion.
eThe two values result from the non-identity of the migration scales of the free and platinated fragments.