Table 2. Identification of the platinum chelates formed by reaction of trans-[Pt(NH3)2(H2O)2]2+ 2 with AG3(T2AG3)3 Ia.
Analysis of the platinated fragments from gel bands 2.1, 2.2, 2.3 and 2.4 (Fig. 3) | Platinated sites | |||||||
---|---|---|---|---|---|---|---|---|
A1 | G4 | A7 | G10 | A13 | A19 | G22 | ||
% Platinated G | 2.1 | <15 | <15 | <15 | ||||
(DMS) | 2.2 and 2.3 | <15 | 60 | 80 | ||||
2.4 | <15 | <15 | <15 | |||||
% Platinated A–N7 | 2.1 | <15 | 60 | <15 | 60 | |||
(DEPC)b | 2.2 and 2.3 | <15 | <15 | 35 | <15 | |||
2.4 | <15 | 30 | 45 | 35 | ||||
3′-Exonuclease | 2.1 | A1 and G2c | A7 | G10 | A13 | A19 | G22 | |
stopc | 2.2 and 2.3 | A1 | G10 | A13 | G22 | |||
2.4 | A1 | G4 | A7 | A13 | A19 | G22 | ||
‘n-mer like’ migration of the platinated fragment after digestion | 2.1 2.2 and 2.32.4 | 9 99 | 10 | 1313 | 16 9–10d | 16–17d 1216 and 12e | 18 18 | 18–19d 19 (2.2) 20 (2.3) 21 |
Base position | 2.1 | 5′ | 5′ | 3′e | 5′ and 3′f | 3′ | 3′ | |
in the chelate | 2.2 and 2.3 | 5′ | 3′ | 5′f | 3′ | |||
2.4 | 5′ | 5′ | 5′ | 5′ and 3′e | 3′ | 3′ | ||
Conclusion | 2.1 | Three bis-chelates A1–G10/A7–A19; A1–A13/A7–A19 and A13–G22/A7–A19 | ||||||
2.2 and 2.3 | One bis-chelate A1–G10/A13–G22g | |||||||
2.4h | Four chelates A1–A13; A13–G22; A7–A19; G4–A19 |
aSee text for step-by-step analysis.
bDEPC/piperidine treatment does not detect A–N1 binding. The lower limit of reliable quantification by gel analysis is 15%.
cFor some adducts, the 3′-exonuclease exhibits a 1 nt premature arrest. This is easily detected thanks to the assignment of the platination sites by chemical digestion.
dThe two values result from the non-identity of the migration scales of the free and platinated fragments.
eThe two fragments result from the same A13 digestion stop. See text.
fBecause of the presence of another platinum chelate at the 5′ side of this base, its position in the chelate cannot be deduced from the migration length of the digested platinated fragment. This was done thanks to the measured distances between the purine nitrogens in structure A, indicating the geometrically feasible chelates (Table 4).
gThe same bis-chelate is present in the products from 2.2 and 2.3. The latter carries a supplementary platinum complex whose binding site has not been identified.
hMass spectrometry data indicate one platinum per oligonucleotide.