Table 3.

Differentially expressed genes selected by the consecutive sampling and coincidence method. List of the probe sets selected by the consecutive sampling and coincidence method using the interval 0.8. The fold change is calculated using the threshold of 10, substituting into the denominator function max(10, Y_avg), where Y_avg is the mean of the under-expressed values. Bold print indicates the probe sets selected also for the interval 0.9. The probe set GI_4755127 printed in italics showed an inconsistent behavior in comparison of the probe 1 versus probe 2.

				Untreated		Treated		Fold Change
	Illumina probe set	Gene Name	Gene Function	Mean Intensity	CV	Mean Intensity	CV	Treated/Untr. mean
Upregulated	GI_4504436	HMOX1	Oxidative Stress	178.9	0.03	1060.1	0.07	5.92
	GI_4505414	NQO1	Oxidative Stress	13.3	0.09	56.7	0.06	4.27
	GI_9790904	GADD45	Cell cycle/DNA Repair	11.1	0.26	21.6	0.10	1.95
	GI_4557514	DDB2	Cell cycle/DNA Repair	24.7	0.07	41.8	0.06	1.69
	GI_4507456	TFRC	Oxidative Stress/Iron regulation	130.7	0.15	217.1	0.01	1.66
	GI_17978494	P21	Oxidative Stress/DNA Repair	676.9	0.01	1069.7	0.02	1.58
	GI_22035635	MGST1	Oxidative Stress	72.4	0.04	107.1	0.09	1.48
	GI_20127459	XPC	DNA Repair	42.5	0.07	59.8	0.04	1.41
	GI_4502884	CLK3	Cell Cycle	52.3	0.09	71.7	0.03	1.37
	GI_5174726	TCP1	Molecular Chaperone	109.5	0.09	147.6	0.05	1.35
	GI_4755127	ATF3	Cell Cycle/DNA Repair	4.3	0.09	13.2	0.21	1.32
Downregulated	GI_4826773	G1P2	Unknown	220.3	0.07	143.1	0.07	1.54
	GI_22538813	CCL5	Chemokine/Oxidative Stress	147.9	0.02	104.1	0.08	1.42
	GI_4506844	CCL4	Chemokine/inflammatory response	98.7	0.04	71.4	0.11	1.38