Table 1.

Power of HapMiner and SSA (π = 0.1). The power of HapMiner and SSA across all the parameter combinations when the QTN effect is 0.1.

Sample size	# of SNPs	40.5			19.8
	Rec. rate	100	200	400	100	200	400
750	HapMiner	95.0	88.0	78.5	93.5	73.5	59.5
	SSA	95.0	83.0	68.5	80.0	66.0	48.5
500	HapMiner	90.5	80.0	59.0	82.0	69.5	47.0
	SSA	87.0	78.5	57.5	76.0	58.5	38.0
250	HapMiner	62.0	53.5	43.5	58.0	36.5	21.5
	SSA	62.0	54.5	40.0	59.5	36.5	32.0