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Comparison of the three methods on the real data set. The power of the three methods when using all SNPs or using tag SNPs only. The numbers in parentheses are the total numbers of genotypes screened for the two designs.
| Design (# of Genotypes) | HapMiner | SSA | MWU |
| All SNPs (26574) | 88% | 93% | 33% |
| Tag SNPs (12300) | 87% | 84% | 45% |
