Table 4.
Nucleotide composition of simple sequence repeats in the R. solanacearum chromosome
| Total | Coding | Non-coding | ||||
| No. | % | No. | % | No. | % | |
| Genome composition | ||||||
| A | 608615 | 16.37 | 543922 | 16.62 | 64693 | 14.53 |
| C | 1238438 | 33.32 | 1112352 | 34.00 | 126086 | 28.31 |
| G | 1252933 | 33.71 | 1099390 | 33.60 | 153543 | 34.47 |
| T | 616427 | 16.58 | 515362 | 15.75 | 101065 | 22.70 |
| Mononucleotide SSRs ≥ 6 bp | ||||||
| Total | 1125 | 444 | 681 | |||
| A | 299 | 26.58 | 109 | 24.55 | 190 | 27.90 |
| C | 220 | 19.56 | 106 | 23.87 | 114 | 16.74 |
| G | 261 | 23.20 | 153 | 34.46 | 108 | 15.86 |
| T | 345 | 30.67 | 76 | 17.12 | 269 | 39.50 |
| G+C | 481 | 42.76 | 259 | 58.33 | 222 | 32.60 |
| A+T | 644 | 57.24 | 185 | 41.67 | 459 | 67.40 |
| Dinucleotide SSRs ≥ 6 bp | ||||||
| Total | 14764 | 13121 | 1643 | |||
| AC/CA | 278 | 1.88 | 205 | 0.15 | 73 | 4.44 |
| AG/GA | 205 | 1.39 | 80 | 0.61 | 125 | 7.61 |
| AT/TA | 47 | 0.32 | 11 | 0.08 | 36 | 2.19 |
| CG/GC | 13710 | 92.86 | 12521 | 95.43 | 1189 | 72.37 |
| CT/TC | 210 | 1.42 | 130 | 0.99 | 80 | 4.87 |
| GT/TG | 323 | 2.19 | 174 | 1.33 | 149 | 9.07 |