Table 1.
Gene List for the Chlamydomonas reinhardtii Plastid Chromosome
| RNA Genes | |||
|---|---|---|---|
| Ribosomal RNAs | 23S rDNAa,b | 16S rDNAb | 7S rDNAb |
| 5S rDNAb | 3S rDNAb | ||
| Transfer RNAs | trnA (UGC) | trnA (UGC) | trnG (UCC) |
| trnC (GCA) | trnD (GUC) | trnE (UUC) | |
| trnE1 (UUC) | trnE2 (UUC) | trnF (GAA) | |
| trnG (GCC) | trnH (GUG) | trnI (GAU) | |
| trnI (GAU) | trnK (UUU) | trnL (UAA) | |
| trnL (UAG) | trnM (CAU) | trnM (CAU) | |
| trnM (CAU) | trnN (GUU) | trnP (UGG) | |
| trnQ (UUG) | trnR (ACG) | trnR2 (AGA) | |
| trnS (UGA) | trnS (GCU) | trnT (UGU) | |
| trnV (UAC) | trnW (CCA) | trnY (GUA) | |
| Small RNAs | tscA | ||
|
Protein-Coding Genes
|
|||
| Photosynthesis | |||
| Photosystem I | psaAa | psaB | psaC |
| psaJ | |||
| Photosystem II | psbAa,b | psbB | psbC |
| psbD | psbE | psbF | |
| psbH | psbJ | psbK | |
| psbL | psbM | psbN | |
| psbT | psbZ | ||
| Cytochrome b6/f | petA | petB | petD |
| petG | petL | ||
| ATP synthase | atpA | atpB | atpE |
| atpF | atpH | atpI | |
| Chlorophyll biosynthesis | chlB | chlL | chlN |
| Rubiscoc | rbcL | ||
| Ribosomal Proteins | |||
| Large subunit | rpl2 | rpl5 | rpl14 |
| rpl16 | rpl20 | rpl23 | |
| rpl36 | |||
| Small subunit | rps2d | rps3d | rps4 |
| rps7 | rps8 | rps9 | |
| rps12 | rps14 | rps18 | |
| rps19d | |||
| Transcription/translation | |||
| RNA polymerase | rpoAd | rpoBa | rpoC1ad |
| rpoC1bd | rpoC2 | ||
| Translation | tufA | ||
| Miscellaneous proteins | cemA | clpP | ccsA |
| Conserved proteins | ycf3 | ycf4 | ycf12 |
|
C. reinhardtii–Specific ORFs
|
|||
| Previously identified | ORF50 | ORF58 | ORF59 |
| ORF112 | ORF140 | ORF271 | |
| ORF1995 | ORF2971 | ||
| Newly identifiede | URF1 (100) | URF3 (162) | URF4 (111) |
| URF5 (117) | URF6 (163) | URF7 (117) | |
| URF8 (192) | URF9 (314)
|
URF12 (112) | |
| URF13 (208) | URF14 (111) | URF15 (117) | |
| URF16 (111) | URF17 (163) | URF18 (171) | |
| URF19 (266) | URF21 (536) | URF22 (136) | |
| URF24 (121) | |||
a
Intron containing gene.
b
Two copies due to inverted repeat.
c
Ribulose-1,5-bisphosphate carboxylase/oxygenase.
d
Limited similarity based on BLAST analysis.
e
Unidentified open readings labeled by consecutive order in genome; not shown in Figure 1. The predicted number of amino acids is in parentheses.