TABLE 1.
List of strains studied
| Cluster | PRSF no. | Other strain no. | Depositora | Originb | Source, geographical origin, yr of isolation | Reference(s) |
|---|---|---|---|---|---|---|
| I | PRSF-L002 | R-10688 | D35-P11 | P | Probiotic product | |
| I | PRSF-L006 | R-11420 | D30-P08 | P | Probiotic product | |
| I | PRSF-L014 | R-16072 | D36-P12 | P | Probiotic product | |
| I | PRSF-L175 | GG (Gorbach-Goldin); LMG 18243 | BCCM/LMG | P | Feces | |
| I | PRSF-L181 | D46 | P | |||
| I | PRSF-L235 | CCUG 28641 | CCUG | H | Heart valve, Sweden, 1991 | |
| I | PRSF-L236 | CCUG 30651 | CCUG | N | Industrial starter, Sweden, 1992 | |
| I | PRSF-L260 | AHP 27651 | Rautio, M. | H | Hepatic abscess (diabetes), Finland, 1998 | 21 |
| I | PRSF-L316 | T30914; LMG 23314 | Rautelin, H. | H | Blood | 19, 23 |
| I | PRSF-L317 | T31528; LMG 23315 | Rautelin, H. | H | Blood | 19, 23 |
| I | PRSF-L318 | T17221; LMG 23316 | Rautelin, H. | H | Blood | 19, 23 |
| I | PRSF-L321 | T4846; LMG 23317 | Rautelin, H. | H | Blood | 23 |
| I | PRSF-L329 | T31583; LMG 23322 | Rautelin, H. | H | Blood | 23 |
| I | PRSF-L331 | T33651; LMG 23324 | Rautelin, H. | H | Blood | 23 |
| I | PRSF-L332 | T33721; LMG 23325 | Rautelin, H. | H | Blood | 19 |
| I | PRSF-L336 | D46 | P | Feces, United States, 1986 | ||
| I | PRSF-L415 | 7.1a; LMG 23529 | D13 | H | Feces, Finland, 1999 | |
| I | PRSF-L416 | 5.5a; LMG 23530 | D13 | H | Feces, Finland, 1999 | |
| I | PRSF-L417 | 5.3a; LMG 23531 | D13 | H | Feces, Finland, 1999 | |
| I | PRSF-L418 | 5.1a; LMG 23532 | D13 | H | Feces, Finland, 1999 | |
| I | PRSF-L419 | 3.8b; LMG 23533 | D13 | H | Feces, Finland, 1999 | |
| I | PRSF-L420 | 3.7a; LMG 23534 | D13 | H | Feces, Finland, 1999 | |
| I | PRSF-L421 | 3.3a; LMG 23535 | D13 | H | Feces, Finland, 1999 | |
| I | PRSF-L422 | 3.1b; LMG 23536 | D13 | H | Feces, Finland, 1999 | |
| I | PRSF-L430 | 14.5a; LMG 23544 | D13 | H | Feces, Finland, 1999 | |
| I | PRSF-L436 | D39-P | P | Probiotic product? | ||
| I | PRSF-L482 | R | Feces | |||
| I | PRSF-L487 | R | Feces | |||
| II | PRSF-L373 | A77/87; LMG 23553 | Harty, D. | H | Blood (endocarditis) | 9 |
| II | PRSF-L375 | A103/70 | Harty, D. | H | Blood (endocarditis) | 9 |
| II | PRSF-L397 | LB21; LMG 23667 | Essum | N | Feces, Sweden, 1999 | |
| II | PRSF-L479 | R | Feces | |||
| III | PRSF-L036 | UCL 17; LMG 23279 | Wauters, G. | H | Blood, Belgium, 1995 | |
| III | PRSF-L042 | UCL 34; LMG 23281 | Wauters, G. | H | Blood, Belgium, 1997 | |
| III | PRSF-L050 | UCL 14; LMG 23285 | Wauters, G. | H | Pus diverticulitis, Belgium, 1995 | |
| III | PRSF-L051 | UCL 15; LMG 23286 | Wauters, G. | H | Blood, Belgium, 1995 | |
| III | PRSF-L079 | UCL 46; LMG 23303 | Wauters, G. | H | Blood, Belgium, 1998 | |
| III | PRSF-L082 | UCLF 2; LMG 23304 | Wauters, G. | H | Feces, Belgium | |
| III | PRSF-L100 | ULille | H | Feces (healthy person), France, 1998 | ||
| III | PRSF-L177 | Arpi 11233; LMG 19717 | BCCM/LMG | H | Blood (terminal ileitis), Denmark | 2 |
| III | PRSF-L261 | SIJD 2001 | Carretto, E. | H | Blood (organ transplantation), Italy | 6 |
| III | PRSF-L273 | CCUG 44276 | CCUG | H | Vaginal flora, Sweden, 2001 | |
| III | PRSF-L274 | CCUG 44667 | CCUG | H | Jaw (osteomyelitis), Sweden, 2000 | |
| III | PRSF-L286 | A64/87; LMG 23551 | Harty, D. | H | Blood (endocarditis) | 9 |
| III | PRSF-L287 | A65/87; LMG 23552 | Harty, D. | H | Blood (endocarditis) | 9 |
| III | PRSF-L325 | T21162; LMG 23320 | Rautelin, H. | H | Blood | 23 |
| III | PRSF-L393 | CJ 61; LMG 23327 | CHUV | H | Blood | |
| III | PRSF-L486 | R | Feces | |||
| IV | PRSF-L015 | R-16073 | D31-P09 | P | Probiotic product | |
| IV | PRSF-L170 | CCUG 23335; LMG 10768 | BCCM/LMG | H | Blood, Sweden, 1988 | |
| IV | PRSF-L303 | D10 | P | Dairy product, Canada, 1981 | ||
| IV | PRSF-L341 | D10 | P | Dairy product, Canada, 1976 | ||
| IV | PRSF-L455 | LRh5; LMG 23525 | Sacco | P | Cheese, Italy | |
| V | PRSF-L088 | UCLF 8; LMG 23307 | Wauters, G. | H | Feces, Belgium | |
| V | PRSF-L113 | Wauters, G. | H | Feces, Belgium | ||
| V | PRSF-L116 | UCLF 20; LMG 23309 | Wauters, G. | H | Feces, Belgium | |
| V | PRSF-L272 | CCUG 41464 | CCUG | H | Cerebrospinal fluid, Norway, 1998 | |
| V | PRSF-L324 | T19557; LMG 23319 | Rautelin, H. | H | Blood | 23 |
| V | PRSF-L330 | T33620; LMG 23323 | Rautelin, H. | H | Blood | 23 |
| V | PRSF-L335 | VTT E-97800 | R | |||
| VI | PRSF-L060 | M6/09/0580; LMG 23294 | UIA | H | Blood, Belgium, 1996 | |
| VI | PRSF-L258 | CCUG 44070 | CCUG | H | Vaginal flora, Sweden, 1999 | |
| VII | PRSF-L034 | UCL 7; LMG 23277 | Wauters, G. | H | Blood, Belgium, 1993 | |
| VII | PRSF-L035 | UCL12; LMG 23278 | Wauters, G. | H | Pleural fluid, Belgium, 1994 | |
| VII | PRSF-L038 | UCL 23; LMG 23280 | Wauters, G. | H | Blood, Belgium, 1995 | |
| VII | PRSF-L043 | UCL 37; LMG 23282 | Wauters, G. | H | Blood, Belgium, 1997 | |
| VII | PRSF-L047 | UCL10; LMG 23283 | Wauters, G. | H | Blood, Belgium, 1994 | |
| VII | PRSF-L048 | UCL 11; LMG 23284 | Wauters, G. | H | Blood, Belgium, 1994 | |
| VII | PRSF-L052 | UCL 16; LMG 23287 | Wauters, G. | H | Blood, Belgium, 1995 | |
| VII | PRSF-L053 | UCL 19; LMG 23288 | Wauters, G. | H | Throat, Belgium, 1995 | |
| VII | PRSF-L054 | UCL 20; LMG 23289 | Wauters, G. | H | Blood, Belgium, 1995 | |
| VII | PRSF-L055 | UCL 21; LMG 23290 | Wauters, G. | H | Sterile site (mediastinum), Belgium, 1995 | |
| VII | PRSF-L057 | UCL 29; LMG 23291 | Wauters, G. | H | Abcess, Belgium, 1997 | |
| VII | PRSF-L058 | M1/11/0657; LMG 23292 | UIA | H | Blood, Belgium, 1991 | |
| VII | PRSF-L059 | M5/01/0582; LMG 23293 | UIA | H | Blood, Belgium, 1995 | |
| VII | PRSF-L061 | MI/9802/663; LMG 23295 | UIA | H | Blood, Belgium, 1998 | |
| VII | PRSF-L063 | MI/9806/5998; LMG 23296 | UIA | H | Bronchoalveolar Lavage fluid, Belgium, 1999 | |
| VII | PRSF-L068 | UCL 5; LMG 23298 | Wauters, G. | H | Blood, Belgium, 1993 | |
| VII | PRSF-L069 | UCL 6; LMG 23299 | Wauters, G. | H | Throat, Belgium, 1993 | |
| VII | PRSF-L070 | UCL 8; LMG 23300 | Wauters, G. | H | Blood, Belgium, 1993 | |
| VII | PRSF-L071 | Wauters, G. | H | Bile, Belgium, 1996 | ||
| VII | PRSF-L083 | UCLF 3; LMG 23305 | Wauters, G. | H | Feces, Belgium | |
| VII | PRSF-L099 | ULille | H | Feces, France, 1998 | ||
| VII | PRSF-L102 t2 | ULille | H | |||
| VII | PRSF-L105 | ULille | H | Feces, France, 1998 | ||
| VII | PRSF-L115 | UCLF 19; LMG 23308 | Wauters, G. | H | Feces, Belgium | |
| VII | PRSF-L117 | UCLF 21; LMG 23310 | Wauters, G. | H | Feces, Belgium | |
| VII | PRSF-L119 | UCLF 23; LMG 23311 | Wauters, G. | H | Feces, Belgium | |
| VII | PRSF-L121 | UCLF 25; LMG 23312 | Wauters, G. | H | Feces, Belgium | |
| VII | PRSF-L128 | UCL 49; LMG 23313 | Wauters, G. | H | Blood, Belgium, 2002 | |
| VII | PRSF-L172 | CCUG 25594; LMG 10770 | BCCM/LMG | H | Feces, bowel drain, Sweden, 1989 | |
| VII | PRSF-L173 | CCUG 27333; LMG 10775 | BCCM/LMG | H | Hip, Sweden, 1990 | |
| VII | PRSF-L234 | CCUG 27772 | CCUG | H | Blood, Sweden, 1991 | |
| VII | PRSF-L252 | CCUG 33698 | CCUG | H | Blood, Sweden, 1994 | |
| VII | PRSF-L255 | CCUG 36679 | CCUG | H | Blood, Sweden, 1996 | |
| VII | PRSF-L257 | CCUG 44047 | CCUG | H | Vaginal flora, Sweden, 1999 | |
| VII | PRSF-L259 | CCUG 44260 | CCUG | H | Vaginal flora, Sweden, 2001 | |
| VII | PRSF-L271 | CCUG 37262 | CCUG | H | Blood, Sweden, 1996 | |
| VII | PRSF-L290 | A544/84; LMG 23550 | Harty, D. | H | Blood | 9 |
| VII | PRSF-L309 | DSM 6594 | D14 | N | Intestinal mucosa (human), Sweden, 1991 | |
| VII | PRSF-L326 | T24029; LMG 23321 | Rautelin, H. | H | Blood | 23 |
| VII | PRSF-L358 | L-1198; LMG 23576 | Avlami, A. | H | Blood | 3 |
| VII | PRSF-L368 | D19 | N | Dairy product, Switzerland, before 1984 | ||
| VII | PRSF-L370 | T32154; LMG 23326 | Rautelin, H. | H | Blood | 23 |
| VII | PRSF-L376 | D10 | P | Nonhuman, France, 1998 | ||
| VII | PRSF-L413 | 14.4a; LMG 23527 | D13 | H | Feces, Finland, 1999 | |
| VII | PRSF-L423 | 4.17a; LMG 23537 | D13 | H | Feces, Finland, 1999 | |
| VII | PRSF-L434 | D13 | H | Blood, United Kingdom, 1999 | ||
| VII | PRSF-L440 | T-25865 | D13 | H | Blood, Finland | |
| VII | PRSF-L477 | R | Feces | |||
| VII | PRSF-L488 | R | Feces | |||
| VII | LMG 6400T | BCCM/LMG | ||||
| Sc | PRSF-L016 | R-16076 | D40-P15 | P | Probiotic product | |
| S | PRSF-L072 | UCL 40; LMG 23301 | Wauters, G. | H | Blood, Belgium, 2000 | |
| S | PRSF-L086 | UCLF 6; LMG 23306 | Wauters, G. | H | Feces, Belgium | |
| S | PRSF-L169 | El Soda 42; LMG 18030 | BCCM/LMG | N | Zabady (yogurt), Egypt, 1992 | |
| S | PRSF-L323 | T4813; LMG 23318 | Rautelin, H. | H | Blood | 23 |
| S | PRSF-L400 | MR870 | Danisco | P | Human, United States |
a
BCCM/LMG, BCCM/LMG Bacteria Collection, Laboratorium voor Microbiologie, Ghent University, Gent, Belgium; CCUG, Culture Collection University of Göteborg, Department of Clinical Bacteriology, Göteborg, Sweden; CHUV, Centre de Collection de Type Microbien, Centre Hospitalier Universitaire Vaudois, Institut de Microbiologie, Université de Lausanne, Lausanne, Switzerland; Danisco, Danisco USA Inc., Madison, WI; Dx, probiotic strain collected from company x; Dx-Py, probiotic strain collected from product y from company x; Essum, Essum AB, Umea, Sweden; Rautelin H., The Haartman Institute, University of Helsinki, and Helsinki University Central Hospital Diagnostic Laboratory, Helsinki, Finland; Sacco, Sacco SRL, Cadorago, Italy; UIA, University Hospital Antwerp, Antwerp, Belgium; ULille, Laboratoire de Bactériologie, Faculté des Sciences Pharmaceutiques et Biologiques, Lille, France; Wauters G., Microbiology Unit, University of Louvain, Brussels, Belgium.
b
P, strain commercially used as probiotic; R, research strain investigated as potential probiotic strain; N, food isolates or industrial starters; H, human isolates.
c
S, single strains that remained ungrouped in numerical analysis of FAFLP profiles.