Table 2.
The six clustered patterns under-represented in the activated response to stimulus gene set and over-represented in the repressed response to stimulus gene set
| Pattern | Activated genes | Repressed genes | P-value | min P | Ac | ||
|---|---|---|---|---|---|---|---|
| occ | pro | occ | pro | ||||
| TNGGTCC/GGACCNA | 34 | 27 | 79 | 62 | 4E−04 | 4E−04 | S000360 |
| CTTTGCNT/ANGCAAAG | 21 | 19 | 64 | 47 | 5E−04 | 5E−04 | S000354 |
| GNANTATA/TATANTNC | 144 | 84 | 229 | 107 | 5E−04 | 5E−04 | |
| TGTGATTGG/CCAATCACA | 3 | 3 | 14 | 13 | 1E−02 | 1E−04 | S000143 |
| CAWTKATTG/CAATMAWTG | 18 | 18 | 26 | 23 | 5E−01 | 3E−04 | S000371 |
| TTTTGTCAC/GTGACAAAA | 3 | 3 | 5 | 6 | 1E+00 | 7E−05 | S000337 |
Notation as in Table 1.