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. 2006 Jul 14;34(Web Server issue):W95–W98. doi: 10.1093/nar/gkl264

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© 2006 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commerical use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Snapshots of the OPAAS web server. (a) The portal page of the server. Two main applications can be chosen here. (b) The input page for the function of one-against-all search in the SCOP90 dataset. Three different input preferences and optional parameter settings are allowed in the left and right panel, respectively. (c) This table of matched results is retrieved from a database containing pre-computed all-against-all comparison results, which is available only with the one-against-all function. (d) The input page for the function of two chain alignment. (e) Output of a two chain alignment. The information of all alignment solutions (‘optimal’ and alternatives) is hierarchically laid out in three frames.