Table 1.

Output of iCR showing the conserved targets of LexA regulon in Fermicutes

COG	Class	Genome	Score	Position	Site	Gene	Synonym
COG1974	K	NC_004193	4.6875	−77	AGAACGAGTGTTTG	lexA	OB1669
COG1974	K	NC_003030	4.77125	−84	AGAACATAAGTTTG	lexA	CAC1832
COG1974	K	NC_002745	4.88271	−71	CGAACAAATGTTTG	lexA	SA1174
COG1974	K	NC_004557	4.82946	−80	AGAACATAAGTTTG	lexA	CTC01298
COG1974	K	NC_003366	4.83493	−70	AGAACATAAGTTTG	lexA	CPE1161
COG1974	K	NC_002570	4.72756	−77	AGAACTTATGTTTG	lexA	BH2356
COG1974	K	NC_000964	4.81601	−118	CGAACCTATGTTTG	lexA	BSU17850
COG1974	K	NC_003923	4.88303	−71	CGAACAAATGTTTG	lexA	MW1226
COG1974	K	NC_003212	4.82162	−79	CGAACCTTTGTTTG	—	LIN1340
COG1974	K	NC_002758	4.88182	−138	CGAACAAATGTTTG	lexA	SAV1339
COG1974	K	NC_003210	4.81541	−79	CGAACCTTTGTTTG	—	LMO1302
COG0468	L	NC_002570	4.64423	−121	CGAATAAATGTTCG	recA	BH2383
COG0468	L	NC_003212	4.67474	−138	CGAATAAATGTTCG	recA	LIN1435
COG0468	L	NC_003210	4.66915	−138	CGAATAAATGTTCG	recA	LMO1398
COG0468	L	NC_003923	4.40442	−143	AGCACGTTTGTTCG	recA	MW1168
COG0468	L	NC_002758	4.40302	−80	AGCACGTTTGTTCG	recA	SAV1285
COG0468	L	NC_003030	4.90549	−48	AGAACAAATGTTCG	recA	CAC1815
COG0468	L	NC_003366	5.01207	−34	AGAACTTATGTTCG	recA	CPE1673
COG0468	L	NC_004461	4.42484	−143	AGTACGTTTGTTCG	—	SE0963
COG0468	L	NC_000908	4.18494	−236	TGAACTGTTGTATG	recA	MG339
COG0468	L	NC_002745	4.40405	−143	AGCACGTTTGTTCG	recA	SA1128
COG0468	L	NC_004557	4.9426	−54	AGAACAGATGTTCG	recA	CTC01289
COG0556	L	NC_000964	4.7767	−122	CGAACTTTAGTTCG	uvrB	BSU35170
COG0556	L	NC_003923	4.8228	−105	CGAACAAACGTTTG	uvrB	MW0720
COG0556	L	NC_002745	4.82248	−105	CGAACAAACGTTTG	uvrB	SA0713
COG0556	L	NC_003030	4.93204	−29	CGAACAAATGTTTG	uvrB	CAC0502
COG0556	L	NC_002758	4.82157	−103	CGAACAAACGTTTG	uvrB	SAV0758
COG0556	L	NC_004193	4.65391	−69	CGAATACTTGTTCG	—	OB2488
COG0556	L	NC_003212	4.62091	−158	CGAAAATATGTTCG	uvrB	LIN2632
COG0556	L	NC_003210	4.61721	−160	CGAAAATATGTTCG	uvrB	LMO2489
COG0556	L	NC_004461	4.90087	−128	CGAACAAATGTTTG	—	SE0541
COG0389	L	NC_003366	4.82409	−26	TGAACATATGTTTG	dinP	CPE1566
COG0389	L	NC_003923	4.77999	−49	GGAACACGTGTTCG	—	MW1251
COG0389	L	NC_002758	4.33641	−6	AGAACATTTGTTCT	—	SAV1364
COG0389	L	NC_002745	4.81919	−49	AGAACACGTGTTCG	—	SA1196
COG0389	L	NC_003210	4.72978	−33	AGAACGCTTGTTCG	—	LMO1975
COG0389	L	NC_004461	4.32424	−75	AGAACAAATGTTCT	—	SE1046
COG0389	L	NC_003212	4.73647	−33	AGAACGCTTGTTCG	—	LIN2082
COG0389	L	NC_004557	4.82946	−40	AGAACATAAGTTTG	—	CTC00437
COG0389	L	NC_000964	4.37402	−68	CGAACATAAGTTCT	yqjW	BSU23710
COG0199	J	NC_004368	4.29015	−280	TGAACGTATGTACG	—	GBS0071
COG0199	J	NC_002662	4.9713	−280	CGAACGTATGTTCG	rpsN	L0391
COG0199	J	NC_003028	4.22998	−280	TGAACGTATGTACG	—	SP0222
COG0199	J	NC_003098	4.22977	−280	TGAACGTATGTACG	rpsN	SPR0202
COG0199	J	NC_002737	4.41534	−278	CGAACGTATGTACG	rpsN	SPY0064
COG0199	J	NC_003485	4.41477	−278	CGAACGTATGTACG	rpsN	SPYM18_0065
COG0199	J	NC_004432	4.29794	−140	CGAAATTGTGTATG	—	MYPE10040
COG0199	J	NC_004070	4.41397	−278	CGAACGTATGTACG	rpsN.1	SPYM3_0053
COG0199	J	NC_004116	4.2898	−280	TGAACGTATGTACG	—	SAG0071
COG1396	K	NC_003485	4.21446	−8	AGAAACCATGTTAG	—	SPYM18_0038
COG1396	K	NC_003923	4.32136	−263	GGAACAAGTGTACG	—	MW1228
COG1396	K	NC_004070	4.21434	−8	AGAAACCATGTTAG	—	SPYM3_0031
COG1396	K	NC_002570	4.4873	−118	GGAACGGGCGTTTG	—	BH0096
COG1396	K	NC_003028	4.47861	−127	TGAACAAATGTTGG	—	SP1115
COG1396	K	NC_002737	4.21453	−8	AGAAACCATGTTAG	—	SPY0037
COG1396	K	NC_004193	4.36271	−253	TGAACAGGAGTTAG	—	OB3501
COG1396	K	NC_003366	4.35319	−58	TGAACATTTGATTG	—	CPE2564
COG0098	J	NC_003028	4.38376	−109	AGAAGTGGTGTTCG	—	SP0227
COG0098	J	NC_004116	4.25066	−110	TGAAGTGGTGTTTG	rpsE	SAG0075
COG0098	J	NC_002737	4.23373	−110	TGAAGTGGTGTTTG	rpsE	SPY0069
COG0098	J	NC_004368	4.25082	−110	TGAAGTGGTGTTTG	rpsE	GBS0075
COG0098	J	NC_003098	4.38367	−109	AGAAGTGGTGTTCG	rpsE	SPR0206
COG0098	J	NC_004070	4.23345	−110	TGAAGTGGTGTTTG	rpsE	SPYM3_0057
COG0098	J	NC_004350	4.24208	−109	TGAAGTGGTGTTTG	rs5	SMU.2009
COG0098	J	NC_003485	4.23361	−110	TGAAGTGGTGTTTG	rpsE	SPYM18_0069
COG0457	R	NC_004557	4.34686	−240	GGAAGAAGAGTTTG	—	CTC02554
COG0457	R	NC_002570	4.38934	−268	CGAAGCAACGTTTG	—	BH3054
COG0457	R	NC_004557	4.39536	−233	AGAACAATTGTATG	—	CTC01089
COG0457	R	NC_002745	4.37946	−17	AGAAATGAGGTTCG	—	SA1448
COG0457	R	NC_003923	4.3797	−17	AGAAATGAGGTTCG	—	MW1570
COG0457	R	NC_003098	4.47855	−97	TGAACAAATGTTGG	rggD	SPR1022
COG0457	R	NC_002758	4.3788	−86	AGAAATGAGGTTCG	—	SAV1620

Note: Gene, Synonym column is as per NCBI ptt table. Class codes—K involved in transcription, L in DNA replication, recombination and repair, J represents orthologs involved in translation, ribosomal structure and biogenesis and so on.