Table 2.
Sequences and genomic positions of mapped HERV-W gag (A) and env (B) elements. Dashes indicate nucleotides that are identical with the prototypical HERV-W sequences. Open circles indicate gaps in sequence. Sequences that could not be unambiguously mapped to one genomic loci are indicated by the number of indistinguishable genomic loci found.
| A | |||
| 5' LTR | 5' HERV-W gag 3' | Tm(°C) | Genomic location (strand) |
| Truncated | GAGGAAooAGAACAACTCCCooACAGGCCAGCAGGC | 80.2 ± 0.2 |
3q26:180256375-180256406(+) |
| None | --A---AG-------T----C--------------- | 80.2 ± 0.2 |
5p13:31432195-31432224(-) |
| Truncated | ---------------T----C--o------------ | 80.9 ± 0.2 |
12p13:8809216-8809247(-) |
| None | ------AG-------T----C------------A-- | 79.7 ± 0.2 |
12p12:18113623-18113657(+) |
| Complete | ------AG-------T----CC-------------- | 80.2 ± 0.2 |
1q42:224124801-224124836(-) |
| n/a | --------------------C--------------- | 80.2 ± 0.2 |
2 elements |
| n/a | ------AG-------T----C--------------- | 80.2 ± 0.2 |
15 elements |
| n/a | ------AG-----G-T----C--------------- | 80.2 ± 0.2 |
11 elements |
| n/a | ---------------T----C--------------- | 79.7 ± 0.2 |
4 elements |
| B | |||
| 5' LTR | 5' HERV-W env 3' | Tm(°C) | Genomic location (strand) |
| n/a | TCCTCCCACACAAATAGTCTGCCTACCCTC | 77.6 ± 0.2 |
5 elements |
| Truncated | ---C---o---G------------------ | 78.1 ± 0.2 |
15q21:53385581-53385607(-) |
| None | A----------G------------------ | 78.7 ± 0.2 |
Xq22:106102713-106102742(-) |
| n/a | -----------G------------------ | 77.6 ± 0.2 |
5 elements |