Table 7.
Transcription factors that are differentially expressed in the FGAS dataset relative to the NSF-DuPont dataset.
| Transcription factor family | over-represented 2 to 5-fold | over-represented over 5-fold | Contigs unique to FGAS with at least 3 ESTs | TOTAL |
| AP2 (ex. CBF1,2,3, Aintegumenta) | 4 | 7 | 9 | 20 |
| BHLH (Ex. AtMYC2) | 5 | 2 | 0 | 7 |
| BZIP (Ex. FD) | 5 | 3 | 0 | 8 |
| CCAAT-box transcription factor | 2 | 1 | 0 | 3 |
| DEAD/DEAH box helicase | 4 | 4 | 0 | 8 |
| F-box protein family | 3 | 0 | 0 | 3 |
| FLOWERING LOCUS T | 1 | 0 | 1 | 2 |
| GIGANTEA protein | 0 | 1 | 1 | 2 |
| Homeodomain Leucine zipper protein (Ex. ABF3 ABF4, ABA response) | 2 | 2 | 1 | 5 |
| MADS box transcription factor (Ex. TaVRT1) | 2 | 0 | 0 | 2 |
| MYB (Ex. AtMYB2) | 14 | 7 | 2 | 23 |
| NAC-domain containing protein (Ex. RD26 dehydration) | 11 | 8 | 0 | 19 |
| PHD finger (Ex. pollen development, chromatin-mediated transcription regulation, a variant of Zn-finger) | 2 | 1 | 0 | 3 |
| RING finger containing protein (Ex. HOS1 regulating cold response, A variant of Zn finger) | 14 | 4 | 3 | 21 |
| SCARECROW gene regulator-like (Ex. Oxidative stress) | 3 | 1 | 0 | 4 |
| WD-repeat containing protein | 0 | 1 | 0 | 1 |
| WRKY transcription factor (Ex. Drought, oxidative stress and pathogen induced) | 14 | 7 | 7 | 28 |
| Zinc finger protein (Ex. CO, Indeterminate-related) | 30 | 11 | 6 | 47 |
| Other Transcription factor-like | 113 | 47 | 14 | 174 |
| Other DNA-binding protein | 143 | 46 | 11 | 200 |
| Total | 372 | 153 | 55 | 580 |