Table 3.

Analysis of 4-component curve resolution results from Alpha-full data. Cell-cycle related genes from Alpha-full that have a strong correlation (r>0.8) with extracted profiles are listed, along with the associated phase. See text for more details.

	Curve 1	Curve 2	Curve 3	Curve 4
	AGA2 M/G1 (3, 0.93)	POL30 G1 (1, 0.96)	HTA3 S (3, 0.91)	PMA1 M (2, 0.95)
	AGA1 M/G1 (7, 0.87)	CLN2 G1 (2, 0.96)	HTA1 S (7, 0.90)	IQG1 M (6, 0.94)
	MFA1 G1 (8, 0.85)	MCD1 G1 (3, 0.95)	ERG3 G2 (8, 0.90)	FTR1 M (10, 0.93)
	STE2 M (10, 0.84)	RNR1 G1 (4, 0.95)	HTB1 S (9, 0.90)	CDC47 M (11, 0.93)
	SST2 M/G1 (14, 0.82)	SWI4 M/G1 (5, 0.94)	HHO1 S (12, 0.89)	VAP1 M (13, 0.93)
		RAD51 G1 (7, 0.93)	HHF2 S (14, 0.89)	MYO1 M (16, 0.92)
		CLB6 G1 (8, 0.93)	CWP2 G2 (24, 0.88)	PHO5 M (17, 0.92)
		RAD53 G1 (9, 0.93)	RFA3 G1 (27, 0.88)	MCM2 M (23, 0.92)
		SVS1 G1 (10, 0.93)	WSC2 S (28, 0.88)	PHO11 M (28, 0.92)
		CTF4 G1 (11, 0.93)	GDA1 S (29, 0.88)	PHO3 M (31, 0.92)
		MNN1 G1 (12, 0.92)	SUR4 G1 (35, 0.87)	CYK2 M (32, 0.92)
		MSH6 G1 (19, 0.91)	HHF1 S (36, 0.87)	FET3 M (33, 0.92)
		CDC9 G1 (21, 0.90)	HHT2 S (38, 0.87)	PMA2 M (36, 0.91)
		SMC3 G1 (22, 0.90)	HHT1 S (42, 0.87)	CLB1 M (40, 0.91)
		RFA1 G1 (25, 0.90)	TUB2 G2 (55, 0.87)	CDC20 M (47, 0.91)
		RAD27 G1 (26, 0.90)	AUR1 G2 (61, 0.86)	BUD4 M (64, 0.90)
		CLB5 G1 (29, 0.90)	MET17 G2 (67, 0.86)	SHE2 M (85, 0.90)
		RNR3 G1 (30, 0.90)	MET14 S (72, 0.86)	FAA3 M/G1 (98, 0.90)
		CDC21 G1 (31, 0.89)	KIP3 G2 (76, 0.86)	SWI5 M (121, 0.89)
		ASF1 G1 (33, 0.89)	GIC1 S (82, 0.86)	CDC6 M/G1 (130, 0.89)
Ntot (Nmatch) with r>0.8:	19 (5)	212 (60)	1517 (91)	3895 (125)
Classification:	M/G1	G1	S	M
Scores:
G1	0.007	0.410	0.181	0.131
S	0.000	0.000	0.712	0.222
G2	0.000	0.000	0.591	0.516
M	0.014	0.000	0.136	0.758
M/G1	0.064	0.084	0.000	0.456