TABLE 1.
Competitor |
Ki (nM) for:
|
IC50 (nM) for T antigen
|
||
---|---|---|---|---|
His-OBD | GST-His-OBD | −ADP-Mg | +ADP-Mg | |
0 TBS | >924 | >60 | >3,875 | 237 |
1 TBS | 28 | 4 | 53 | 50 |
2 TBS | 48 | 0.9 | 60 | 112 |
Site II 1234 | 31 | 0.5 | 14 | 13 |
Site II mut | >1,550 | >33 | 3,758 | 75 |
Site II 1 | 107 | 7 | 47 | 38 |
Site II 2 | 150 | 11 | 211 | 45 |
Site II 3 | 57 | 4 | 60 | 21 |
Site II 4 | 123 | 8 | 159 | 27 |
Site II 13 | 39 | 0.7 | 18 | 28 |
Site II 24 | 62 | 1 | 56 | 35 |
Site II 13+1 | 50 | ND | 33 | ND |
Site II 13+2 | 58 | ND | 27 | ND |
Site II 13+3 | 80 | ND | 29 | ND |
Core | 50 | 0.9 | 19 | 1 |
Core mut | >376 | >24 | >3,875 | 15 |
Ki values and IC50 were calculated as indicated in the text from inhibition curves obtained with the indicated competitor duplex DNA in binding reactions performed with the one TBS-containing probe. Ki values for the His-OBD and GST-His-OBD proteins were obtained from binding reactions performed in buffer containing 100 mM NaCl. IC50 for T antigen were obtained from binding reactions containing 50 mM NaCl. The concentrations of proteins and probe were, respectively, 100 and 15 nM for His-OBD, 100 and 15 nM for GST-His-OBD, and 34 and 15 nM for full-length T antigen. When indicated, ADP and Mg were used at concentrations of 4 and 7 mM, respectively (ADP-Mg). Values presented are the average of two independent measurements that typically varied by less than 10% from the mean value. ND, not determined.