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. 2003 May;77(9):5512–5518. doi: 10.1128/JVI.77.9.5512-5518.2003

TABLE 1.

Ki for His- and GST-His-OBD and IC50 for T antigena

Competitor Ki (nM) for:
IC50 (nM) for T antigen
His-OBD GST-His-OBD −ADP-Mg +ADP-Mg
0 TBS >924 >60 >3,875 237
1 TBS 28 4 53 50
2 TBS 48 0.9 60 112
Site II 1234 31 0.5 14 13
Site II mut >1,550 >33 3,758 75
Site II 1 107 7 47 38
Site II 2 150 11 211 45
Site II 3 57 4 60 21
Site II 4 123 8 159 27
Site II 13 39 0.7 18 28
Site II 24 62 1 56 35
Site II 13+1 50 ND 33 ND
Site II 13+2 58 ND 27 ND
Site II 13+3 80 ND 29 ND
Core 50 0.9 19 1
Core mut >376 >24 >3,875 15
a

Ki values and IC50 were calculated as indicated in the text from inhibition curves obtained with the indicated competitor duplex DNA in binding reactions performed with the one TBS-containing probe. Ki values for the His-OBD and GST-His-OBD proteins were obtained from binding reactions performed in buffer containing 100 mM NaCl. IC50 for T antigen were obtained from binding reactions containing 50 mM NaCl. The concentrations of proteins and probe were, respectively, 100 and 15 nM for His-OBD, 100 and 15 nM for GST-His-OBD, and 34 and 15 nM for full-length T antigen. When indicated, ADP and Mg were used at concentrations of 4 and 7 mM, respectively (ADP-Mg). Values presented are the average of two independent measurements that typically varied by less than 10% from the mean value. ND, not determined.