TABLE 5.
Repeat units of 7, 14, and 60 residues identified in the linker and passenger domains of Y. enterocolitica protein Yen1
| Repeat designation | Initial residue position | Sequence with similaritya |
|---|---|---|
| 7-residue repeats | ||
| R71 | 365 | DHKFRQL |
| R72 | 372 | DNRLDKL |
| R73 | 379 | DTRVDKG |
| 14-residue repeats | ||
| R141 | 258 | KSAETLENARKEAF |
| R142 | 273 | QSKDVLNMAKAHSN |
| R143 | 288 | VARTTLETAEEHAN |
| R144 | 303 | VARTTLETAEEHAN |
| R145 | 319 | KSAEALASANVYAD |
| R146 | 333 | KSSHTLKTANSYTD |
| 60-residue repeats | ||
| R601 | 3 | KDFKISVSAALISALFSSPYAFADDYNGIPNLTAVQISPNADPALGQEYPVRPPVPGAGG |
| R602 | 63 | LNCSAKGIHS-IAIGATAEAAKGAAVA-VGAGSIATGVN--SVAIGPLSKALGDSAVTYG |
| R603 | 120 | IGARASTSDTGVAVGFNSKADAKNSVA-IGHSSHVAANHGYSIAIGDRSKTDRENSVSIG |
| R604 | 190 | ESLNRQLTHLAAGTKDTDAVNVAQLKKEIEKTQENTNKKSAELLAKPNAYADNKSSSVLG |
a
For each group of repeats, relative similarity is indicated as follows: boldface, identity; italics, close similarity; underlining, more distant similarity (see GAP program [8]).