Table 1.
Comparison of alleles identified by Ecotilling with NIEHS SNPs
| GenBank ID | Target name | Start position | Window size (bp) | Alleles | ||
|---|---|---|---|---|---|---|
| Ecotilling/NIEHS | New by Ecotilling | Total by Ecotilling | ||||
| AY607842 | DCLRE1A | 005669 | 1289 | 3/3 | 2 | 5 |
| AY337516 | GAD1 | 043917 | 1299 | 6/6 | 0 | 6 |
| AY632118 | HK2 | 040539 | 1297a | 3/4 | 4 | 7 |
| AY800271 | NAT1 | 054558 | 1027 | 6/6 | 0 | 6 |
| AY504960 | TNFRSF5 | 003810 | 1298 | 6/6b | 1 | 8 |
| Total | 24/25 | 7 | 32 | |||
aData are not reported between positions 41 090 and 41 160 of HK2 because of difficulties in sequencing and Ecotilling caused by low nucleotide complexity and the presence of heterozygous indels.
bOne allele reported by NIEHS was not validated by resequencing the corresponding sample screened by our lab.