Table 2.
Dissociation constants and observed rate constants for T.maritima tRNase Z variants
Enzyme | Ion | Pre-tRNAArg (74CCA76) | ||
---|---|---|---|---|
Cleavage | Kd (μM)a | kobs (min−1)b | ||
D52S | Mg2+ | — | 0.35 ± 0.083 | — |
Mn2+ | — | 0.29 ± 0.018 | — | |
D52E | Mg2+ | — | 0.29 ± 0.160 | — |
Mn2+ | CC|A | ND | 0.36 ± 0.004 | |
H222C | Mg2+ | — | 0.39 ± 0.095 | — |
Mn2+ | CCA| | ND | < 0.01 | |
H222S | Mg2+ | — | 0.36 ± 0.094 | — |
Mn2+ | — | 0.25 ± 0.087 | — | |
H222K | Mg2+ | — | 0.23 ± 0.020 | — |
Mn2+ | CCA| | ND | 0.06 ± 0.003 |
|, primary cleavage site; ND, not determined; —, cleavage not detected or hardly detected (Supplementary Figure 1).
aData are the means ± SD of three independent experiments (Supplementary Figure 2).
bEach fluorescein-labeled pre-tRNA (20 nM) was reacted with each variant (700 nM) at 60°C for 3 min. Data are the means ± SD of three independent experiments.