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. 2003 May;185(9):2711–2722. doi: 10.1128/JB.185.9.2711-2722.2003

TABLE 1.

Synthetic oligonucleotide primers

Genetic element(s) and primer designation Sequencesa Nucleotide positions Source or reference
ccr genesb
    βc(β2) 5′-ATTGCCTTGATAATAGCCTTCT-3′ 25987-25967 Okuma et al. (35)
    αc 5′-ATCTATTTCAAAAATGAACCA-3′ 25424-25444 Okuma et al. (35)
SCC12263c
    hL-1 5′-TCACCTTCACATACTTTTCTCA-3′ 12-33 This study
    hL-2 5′-TCGTATGCGGTATAACCTCCGTCT-3′ 3361-3338 This study
    hL-3 5′-ACCTTTATCGATAAACTCAT-3′ 4851-4870 This study
    hL-4 5′-AAGTTCCTTCTTGTGTAAATGGA-3′ 507-529 This study
    hR-1 5′-ATGAAGATTACTATTTTAGCT-3′ 22820-22800 This study
    hR-2 5′-TTACTTTGCTTCCAATCTATTAAT-3′ 22140-22163 This study
    hR-3 5′-ATGTAGAATATAAAGAAGGCAA-3′ 21795-21774 This study
    hR-4 5′-AACGTATGACACAAGGACAAA-3′ 22540-22520 This study
    Hom1 5′-AAAAGGATCCTTGAAGAAATTAATCATGCTGA-3′ 11940-11951 This study
    Hom2 5′-AAAAGGATCCTCATTGTTAGATAGTTGGAATA-3′ 15584-15563 This study
a

Introduced BamHI sites are underlined.

b

Primers listed are specific for ccr genes of strain N315 (DDBJ/EMBL/GenBank accession no. D86934 [see reference 17]).

c

Primers listed are specific for SCC12263 of strain GIFU12263 (DDBJ/EMBL/GenBank accession no. AB063171).