Table 3.
Twenty most abundant InterPro domains identified in coffee unigene set and comparative statistics for tomato and Arabidopsis genes
| InterPro accession | Description | % of unigenes (ranking) | ||
|---|---|---|---|---|
| Coffee | Tomato | Arabidopsis | ||
| IPR000719 | Protein kinase | 1.6 | 1.20 (1) | 3.0 (1) |
| IPR000694 | Proline-rich region | 1.3 | 0.91 (4) | 0.003 (1763) |
| IPR002290 | Serine/threonine protein kinase | 0.85 | 1.10 (2) | 0 |
| IPR001245 | Tyrosine protein kinase | 0.69 | 1.0 (3) | 0.15 (311) |
| IPR008271 | Serine/threonine protein kinase, active site | 0.61 | 0.68 (5) | 2.6 (2) |
| IPR000504 | RNA-binding region RNP-1 (RNA recognition motif) | 0.55 | 0.60 (6) | 0.59 (6) |
| IPR001680 | G-protein beta WD-40 repeat | 0.49 | 0.51 (8) | 0.51 (8) |
| IPR001611 | Leucine-rich repeat | 0.48 | 0.59 (7) | 0.59 (7) |
| IPR002048 | Calcium-binding EF-hand | 0.36 | 0.34 (13) | 0.34 (13) |
| IPR000379 | Esterase/lipase/thioesterase | 0.33 | 0.43 (10) | 0.43 (10) |
| IPR001806 | Ras GTPase superfamily | 0.32 | 0.26 (22) | 0.43 (70) |
| IPR003579 | Ras small GTPase, Rab type | 0.29 | 0.23 (27) | 0 |
| IPR005123 | 2OG-Fe(II) oxygenase superfamily | 0.27 | 0.26 (21) | 0.47 (52) |
| IPR000626 | Ubiquitin | 0.27 | 0.22 (32) | 0.40 (89) |
| IPR002401 | E-class P450, group I | 0.27 | 0.46 (8) | 0.77 (24) |
| IPR002347 | Glucose/ribitol dehydrogenase | 0.26 | 0.23 (28) | 0.33 (110) |
| IPR001005 | Myb DNA-binding domain | 0.26 | 0.34 (15) | 1.34 (8) |
| IPR005225 | Small GTP-binding protein domain | 0.26 | 0.24 (25) | 0.68 (27) |
| IPR000608 | Ubiquitin-conjugating enzymes | 0.26 | 0.21 (34) | 0.19 (221) |
| IPR007090 | Leucine-rich repeat, plant specific | 0.25 | 0.40 (12) | 1.07 (11) |