Table 8.
Coffee genes not found in Arabidopsis, but with conserved counterparts in tomato or other Solanaceous species
| Coffee unigene | Solanaceae EST-derived unigene match | Score | GenBank (non-redundant and dbest) best match | Score | Annotation |
|---|---|---|---|---|---|
| 124978 | 240871 tomato | 454 | Unknown function | ||
| 121324 | 235756 tomato | 429 | gblCB686389.1 [Brassica napus] | 44 | Unknown function |
| 131820 | 213100 tomato | 426 | gil50252229.1 [Oryza sativa] | 73 | Unknown function |
| 121542 | 240321 tomato | 416 | refiNP_922676.1 [Oryza sativa] | 75 | Unknown function |
| 131934 | 219759 tomato | 377 | embiCAE05735.1 [Oryza sativa] | 297 | TFIIH basal transcription factor p52 subunit |
| 121140 | 236347 tomato | 320 | Unknown function | ||
| 131445 | 225435 tomato | 320 | Unknown function | ||
| 125230 | 243065 tomato | 238 | gil13183175 [Seasame indicum] | 45 | 2S albumin |
| 131030 | 246364 potato | 213 | refINP_524404.1 [Drosophila melanogaster] | 110 | Phospyhatidyl inositol transfer protein |
| 120120 | 237254 tomato | 202 | gbICF349465.1 [Rose] | 52 | Unknown function |
| 126635 | 237314 tomato | 185 | Unknown function | ||
| 126575 | 237314 tomato | 182 | Unknown function | ||
| 130675 | 209387 petunia | 177 | gbICK093976.1 [Populus tremula] | 438 | Unknown function |
| 128020 | 237314 tomato | 167 | Unknown function | ||
| 123615 | 249253 potato | 163 | gbIAAO73272.1 [Oryza sativa] | 140 | Unknown function |
| 126432 | 240551 tomato | 163 | gil34878866 [Rattus norvegicus] | 56 | Phosphatidylinositolglycan class N |
| 124384 | 197378 pepper | 156 | gblCA815435.1 [Vitis vinifera] | 1,009 | Unknown function |
| 122126 | 239632 tomato | 153 | Unknown function | ||
| 131601 | 232010 tomato | 145 | gbICK229938.1 [Macaca mulatta] | 74 | 40S Ribosomal protein S21 |
| 119644 | 237150 tomato | 143 | refINP_921250.1 [Oryza sativa] | 70 | Helicase |
The GenBanks Best match exclude those from Solanaceae, Coffea and Hedyotis (both members of the Rubiaceae family). Solanaceae EST-derived