. 2003 May;41(5):2113–2125. doi: 10.1128/JCM.41.5.2113-2125.2003

TABLE 2.

DNA sequences of primers designed for this study

Gene	Forward sequence	Reverse sequence
afaE5	`GCGATCATGGCCGCGACCAGCA`	`CAACTCACCCAGTAGCCCCAGT`
cdt2	`GAAAGTAAATGGAATATAAATG^a`	`TTTGTGTTGCCGCCGCTGGTGAA`
cdt3	`GAAAGTAAATGGAATATAAATG^a`	`TTTGTGTCGGTGCAGCAGGGAAA`
cfaI	`GGTGCAATGGCTCTGACCACA`	`GTCATTACAAGAGATACTACT`
cs1	`GCTCACACCATCAACACCGTT`	`CGTTGACTTAGTCAGGATAAT`
cs3	`GGGCCCACTCTAACCAAAGAA`	`CGGTAATTACCTGAAACTAAA`
derb122	`CGTGTGGGAGCCCTGAGCCTT`	`CCGGCCTGGTTGCTAGTATT`
espA group I	`CATCAGTTGCTAGTGCGAATG`	`CAGCAAATGTCAAATACGTT`
espA group II	`CGACATCGACGATCTATGACT`	`CCAAGGGATATTGCTGAAATA`
espA group III	`CATCAGTTGCTAGTGCGAATG`	`CAGCAAATGTCAAATACGTT`
espB group I	`CGGAGAGTACGACCGGCGCTT`	`GCACGGCTGGCTGCTTTCGTT`
espB group II	`GCTGCCATTAATAGCGCAACT`	`TATTGTTGTTACCAGCCTTGC`
espB group III	`GTAATGACGGTTAATTCTGTT`	`GCCGCATCAATAGCCTTAGAA`
espC	`CCCATAACGGAACAACTCAT`	`CAGAATAGACCAAACATCTGCA`
etpD	`GGCCACTTTCAATGTTGGTCA^b`	`CGACTGCACCTGTTCCTGATTA`
invX	`TCTGATATAGTTTATATGGGT`	`TCAAACCCCACTCTTAATTAA`
ipaC	`TTGCAAAAGCAATTTTGCAAC`	`TGCCGAACAATGTTCTCTGCA`
kfiB	`AATTGTTTTAAAATCTGTTCT`	`TGAGACTGAAATTACATTTAA`
leoA	`GAACAATTCAAACAGTTCAGT`	`TTATTCAAATCGCGCAATACC`
lngA	`CAAATACAGTCCGCGTACGA`	`CCATTGTTACCTAAAGAGCGT`
neuC	`TTGGCAGTTACAGGAATGCAT`	`AACAGTGAACCATATTTTAGT`
paa	`ATGAGGAACATAATGGCAGG`	`TCTGGTCAGGTCGTCAATAC`
rfbO9	`GGTGATCGATTATTCCGCTGA`	`ACGCCTCATCGGTCAGCGCCT`
rfbO101	`TCTGCACGTTTAAAATTATTG`	`GTTTCTCCGTCAGAATCAAGC`
rtx	`CTACCGTAGCGGGCGATGGTA`	`CAGCGCCTGTCCGTGTTCGGC`
sfaA	`CCCTGACCTTGGGTGTTGCGA`	`GTACTGAACTTTAAAGGTGG`
stah	`AAGAAATCAATATTATTTAT`	`AATAGCACCCGGTACAAG`
stxA group I	`GCGAAGGAATTTACCTTAGA`	`CAGCTGTCACAGTAACAAAC`
stxA group II	`CTTGAACATATATCTCAGGG`	`ACAGGAGCAGTTTCAGACAGT`
stxB group I	`GGTGGAGTATACAAAATATAA`	`ATGACAGGCATTAGTTTTAAT`
stxB group II	`TTCTGTTAATGCAATGGCGG`	`TTCAGCAAATCCGGAGCCTGA`
stxB group III	`GAAGAAGATGTTTATAGCGG`	`ACTGCAGGTATTAGATATGAT`
tir group I	`ATTGGTGCCGGTGTTACTGCTG`	`CTCCCATACCTAAACGCAAT`
tir group II	`ATTGGTGTTGCCGTCACCGCT`	`ACGCCATGACATGGGAGG`
tir group III	`ATTGGTGCTGGTGTAACGACT`	`ATTGCGTTTAGGTATGGG`
uspA	`CTACTGTTCCCGAGTAGTGTG`	`GGTGCCGTCCGGAATCGGCGT`

Sequence obtained from Eric Oswald (personal communication).

Published primer sequence (82).