TABLE 4.
Sequencing results of RFLP clones only present in patients’ t = 0 samples or randomly selected from t = 0 samples of controls
| Patient or control no. | RFLP | Sequencing result | Score |
|---|---|---|---|
| Patients | |||
| 1 | CT | Uncultured Veillonella spp. | 1096 |
| DO | Uncultured bacterium clone DJAT-434 | 797 | |
| Uncultured γ-proteobacterium | 797 | ||
| 2 | CQ | Streptococcus gordonii | 1068 |
| CV | Mycoplasma genitalium | 1019 | |
| CW | Mycoplasma genitalium | 1080 | |
| CX | Mycoplasma genitalium | 1096 | |
| DB | Uncultured bacterium clone DJAT-434 | 797 | |
| Uncultured γ-proteobacterium | 797 | ||
| DE | Mycoplasma genitalium | 1088 | |
| 3 | CJ | Unidentified bacterium 6C | 624 |
| Methylobacterium spp. | 595 | ||
| CK | Corynebacterium thomssenii | 1007 | |
| DF | Haemophilus parainfluenzae | 969 | |
| Haemophilus paraphrophilus | 946 | ||
| DI | Unidentified oral bacterium AP60-15 | 676 | |
| Gemella haemolysans | 670 | ||
| DL | Haemophilus parainfluenzae | 763 | |
| Pseudomonas spp. | 728 | ||
| DM | Actinomyces turicensis | 648 | |
| Bacterial spp. | 634 | ||
| DR | Haemophilus paraphrophilus | 959 | |
| Haemophilus parainfluenzae | 959 | ||
| DU | Corynebacterium genitalium | 946 | |
| Uncultured Corynebacterium sp. | 473 | ||
| DV | Pseudomonas fluorescens | 1051 | |
| 4 | DH | Uncultured bacterium clone DJAT-434 | 735 |
| Uncultured γ-proteobacterium | 735 | ||
| DY | Pseudomonas fluorescens | 1082 | |
| 5 | CB | Uncultured bacterium clone TFBME10 | 613 |
| Pseudomonas sp. G2 | 613 | ||
| CH | Variovorax sp. strain HAB-30 | 920 | |
| DB | Uncultured bacterium clone DJAT-434 | 706 | |
| Pseudomonas sp. | 706 | ||
| DP | Uncultured bacterium clone DJAT-434 | 706 | |
| Uncultured γ-proteobacterium | 706 | ||
| EB | Uncultured bacterium D29A | 1063 | |
| Streptococcus salivarius | 1061 | ||
| Controls | |||
| 1 | K | Mesorhizobium loti | 932 |
| Rhizobium sp. strain CJ5 | 924 | ||
| Rhizobium loti | 924 | ||
| M | Pseudomonas marginalis | 1072 | |
| Pseudomonas spp. | 1072 | ||
| Pseudomonas reactans | 1072 | ||
| Pseudomonas veronii | 1072 | ||
| H | Unidentified bacterium ox-SCC-25/5 | 946 | |
| Unidentified bacterium ox-SCC-36/29 | 930 | ||
| O | Uncultured Comamonas spp. | 876 | |
| Pseudomonas testosteroni | 876 | ||
| Comamonas testosteroni | 876 | ||
| P | Peptostreptococcus genospecies | 500 | |
| Peptostreptococcus spp. | 456 | ||
| T | Uncultured Comamonas spp. | 891 | |
| Pseudomonas testosteroni | 891 | ||
| Comamonas testosteroni | 891 | ||
| AJ | Uncultured eubacterium WD293 | 1017 | |
| Pseudomonas mephitica | 1005 | ||
| AK | Uncultured eubacterium WD293 | 1036 | |
| Agricultural soil bacterium | 1027 | ||
| AN | Pseudomonas spp. | 1052 | |
| Pseudomonas gessardii | 1046 | ||
| Pseudomonas libaniensis | 1046 | ||
| G | Uncultured bacterium clone DJAT-434 | 783 | |
| Uncultured γ-proteobacterium | 783 | ||
| 2 | BG | Sphingomonas spp. | 787 |
| Uncultured bacterium GKS2-124 | 785 | ||
| AO | Ralstonia detusculanense | 628 | |
| Ralstonia spp. | 628 | ||
| Uncultured bacterium OSs7 | 628 | ||
| 3 | V | Unidentified bacterium rM7 | 648 |
| Comamonas testosteroni | 640 | ||
| AE | Ralstonia detusculanense | 713 | |
| Ralstonia spp. | 713 | ||
| Burkholderia spp. | 682 | ||
| AF | Pseudomonas jessenii | 653 | |
| Pseudomonas spp. | 653 | ||
| Uncultured eubacterium | 647 | ||
| AG | Pseudomonas sp. strain G2 | 1036 | |
| Pseudomonas sp. strain NZ66/64/124/122/113/108/106/65 | 1028 | ||
| Pseudomonas synxantha | 1028 | ||
| 4 | AM | Streptococcus agalactiae | 624 |
| Streptococcus agalactiae | 600 | ||
| BQ | Actinomyces viscosus | 997 | |
| Actinomyces viscosus | 908 |