Expected secondary structures in DNA loops
containing various insertions within HIS4. As discussed
in the text, heteroduplex formation between a his4 gene
with a mutant insertion and a wild-type HIS4 gene will
produce a DNA loop. The upper strand in each duplex is the
nontranscribed strand. (Upper) The loops result from a
heteroduplex in which the nontranscribed strand is mutant and the
transcribed strand is wild type. (Lower) The
nontranscribed strand is wild type and the transcribed strand is
mutant. The inserted sequence is shown in bold. Strain names and the
percentages of the unselected tetrads representing PMS tetrads are
shown in the middle. A high percentage of PMS reflects inefficient
repair of the DNA loop. The relevant genotypes are: (a)
HMY21 (heterozygous for his4-CTG10);
(b) HMY16 (heterozygous for
his4-AGT10); (c) PG88
(heterozygous for his4-R), his4-R
represents an insertion of 36 bp with a randomized DNA sequence that
should be incapable of forming stable secondary structures, and
(d) HMY43 (heterozygous for his4-Pal),
his4-Pal is a 36-bp, nontriplet repeat sequence that
should have similar base-pairing properties to
his4-CTG10.