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. 2003 Jun;77(11):6108–6116. doi: 10.1128/JVI.77.11.6108-6116.2003

FIG. 3.

FIG. 3.

Deduced amino acid sequence alignment of HIV-1 env C2-V3-C3 regions from ES1 (A) and ES38 (B). The majority of sequences (V3-C3 region) were generated from amplified products with primer pair P5 and PV32 (outer) and primer pair PVU and PV32 (inner) (see Materials and Methods). Longer sequences (C2-V3-C3 region) of clones, e.g., clone 21 at week 8 in panel A were generated with primer pair P5-2 and PV3 (outer) and primer pair P5 and Bsu (inner). All sequences are aligned with the consensus sequences from each ES individual. Weeks are numbered after the first sample was collected from each ES individual. The numbers of clones with identical sequences out of the total analyzed are indicated in the right column. Dots indicate identical sequences; asterisks denote the stop codons.