TABLE 2.
Types of nucleotide substitutions in different genes cloned from RP macaquesa
| Clone | No. of substitutions
|
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
env
|
tat
|
gag
|
pol
|
|||||||||
| Sd | Sn | ds/dn | Sd | Sn | ds/dn | Sd | Sn | ds/dn | Sd | Sn | ds/dn | |
| 445-2 | 1.0 | 13.0 | 0.28 | 0.0 | 1.0 | N/Ab | ||||||
| 445-3 | 4.0 | 13.0 | 1.13 | 2.0 | 0.0 | N/A | ||||||
| 445-4 | 2.0 | 7.0 | 1.05 | 0.0 | 1.0 | N/A | ||||||
| 573-1 | 4.0 | 28.0 | 0.52 | 0.0 | 1.0 | N/A | ||||||
| 573-3 | 4.0 | 24.0 | 0.61 | 0.0 | 1.0 | N/A | ||||||
| 573-5 | 2.0 | 28.0 | 0.26 | 0.0 | 1.0 | N/A | ||||||
| 583-6 | 2.0 | 8.0 | 0.92 | 0.0 | 0.0 | N/A | ||||||
| 583-8 | 3.0 | 10.0 | 1.10 | 0.0 | 0.0 | N/A | ||||||
| 583-14 | 2.0 | 09.0 | 0.81 | 0.0 | 0.0 | N/A | ||||||
| 573-g1 | 4.0 | 7.0 | 2.10 | 6.0 | 3.0 | 7.44 | ||||||
| 573-g2 | 5.0 | 6.0 | 3.06 | 9.0 | 4.0 | 8.39 | ||||||
| 573-g3 | 5.0 | 5.0 | 3.68 | 7.0 | 6.0 | 4.34 | ||||||
| 583-e3 | 4.0 | 7.0 | 2.09 | 3.0 | 11.0 | 1.01 | ||||||
| 583-e4 | 2.0 | 6.0 | 1.22 | 4.0 | 6.0 | 2.47 | ||||||
| 583-e5 | 3.0 | 8.0 | 1.38 | 8.0 | 8.0 | 3.73 | ||||||
a
Sd, synonymous substitutions; Sn, nonsynonymous substitutions; ds/dn, ratio of synonymous to nonsynonymous substitutions.
b
N/A, not applicable.