TABLE 2.
Calculation defining the minimal number of RSV P115S IN dimers required for maximum full-site integration activitya
| Initial IN concn (nM) | Time of maximum activity prior to inactivation (min) | % Active IN leftb | Calculated IN left (nM) | IN dimers per viral endc |
|---|---|---|---|---|
| 4 | 1 | 67 | 2.7 | 7.2 |
| 6 | 3 | 29 | 1.8 | 4.8 |
| 8d | 3 | 29 | 2.4 | 6.4 |
| 12 | 3 | 29 | 3.5 | 9.3 |
The maximum full-site integration activity was determined from Fig. 4 and 5. It was defined as the last time point showing maximum full-site activity. The average t1/2 for full-site integration was 1.7 min, as defined in Table 1.
The formula used to calculate the % active IN left (N) as a function of time is N = N0e−λt.
Calculated number of IN dimers per viral DNA end at maximum full-site integration activity at the chosen time of 1 or 3 min. For illustration, at 3 nM IN, the calculated number of IN dimers per end is 8 (4.5-kbp double-ended LTR substrate).
Average of four experiments.