Table 3.
Summary of ANOVA conducted on mouse dataset
| Threshold | Number of genes with expression > threshold | Proportion of genes with P-value < 0.05 when following variables were tested individually* | ||
|---|---|---|---|---|
| Replicate (n = 3) | Mouse (n = 3) | Tissue (n = 4) | ||
| >0 | 6016 | 0.035 | 0.066 | 0.814 |
| >20 | 963 | 0.031 | 0.086 | 0.978 |
| >50 | 773 | 0.031 | 0.082 | 0.978 |
| >100 | 440 | 0.030 | 0.098 | 0.980 |
| >200 | 220 | 0.023 | 0.055 | 0.990 |
*
General linear model tested on a per-gene basis (expression = replicate + mouse + tissue). P values considered were calculated for each variable individually having adjusted for the variation due to the remaining variables (added-last test).