Table 1.
Under- and overrepresented genes in the T. pallidum BAC library
| Copy number of intact genes | Predicted function (gene)a |
|---|---|
| 0 | DNA-directed RNA polymerase, beta subunit (rpoB, TP0241); RNA polymerase, beta′ subunit (rpoC, TP0242); ribosomal protein S12 (rpsL, TP0243); ribosomal protein S7 (rpsG, TP0244); N-acetylmuramoyl-L-alanine amidase (amiA, TP0247); flagellar filament outer layer protein (flaA-1, TP0249); DNA-binding protein II (dbh, TP0251); apolipoprotein N-acyltransferase (cutE, TP0252); polynucleotide adenylyltransferase (pcnB, TP0596) |
| 1 | ribosomal protein L10 (rplJ, TP0239); ribosomal protein L7/L12 (rplL, TP0240) |
| 2 | primosomal protein N (priA, TP0230); ribosomal protein L1 (rplA, TP0238); oligopeptide ABC transporter (oppA, TP0585), leucyl-tRNA synthetase (leuS, TP0586); phosphocarrier protein HPr (ptsH, TP0589); ribosomal protein L36 (rpmJ-2, TP0590); HPr kinase (ptsK, TP0591); adenylate kinase (adk, TP0595) |
| 3 | heat shock protein 70 (dnaK, TP0216); anti-sigma F factor antagonist (TP0233); ribosomal protein L33 (rpmG, TP0234); preprotein translocase subunit (secE, TP0235); transcription antitermination protein (nusG, TP0236); ribosomal protein L11 (rplK, TP0237); ribosomal protein L1 (rplA, TP0238) |
| 23 | long-chain-fatty-acid-CoA ligase (TP0145); thioredoxin (trx, TP0919); flagellar protein (fliS, TP0943); DNA helicase II (uvrD, TP1028); tpr protein L (tprL, TP1031) |
| 24 | K+ transport protein (ntpJ, TP0168); methylated-DNA-protein-cysteine S-methyltransferase (dat, TP0141); thiamine ABC transporter, ATP-binding protein (TP0142); thiamine ABC transporter, permease protein (TP0143); thiamine ABC transporter, thiamine-binding periplasmic protein (TP0144); prolyl-tRNA synthetase (proS, TP0160); Mg2+ transport protein (mgtE, TP0917); pyruvate oxidoreductase (TP0939) |
| 25 | alpha-amylase 1 (TP0147); nitrogen fixation protein (rnfC, TP0152); oligoendopeptidase F (TP1026) |
| 27 | tex protein (tex, TP0924); flavodoxin (TP0925); signal peptidase I (TP0926); UDP-N-acetylmuramoylalanyl-D-glutamate2,6-diaminopimelate ligase (murE, TP0933); glutamate transporter (TP0934); N-acetylphosphinothricin-tripetide-deacetylase (TP0935); hemolysin (TP0936) |
a
Further information available at http://www.tigr.org and http://www.stdgen.lanl.gov