Table 1.
Assignment Statistics for Each Genome
| Organism | Celeg | sacc | aero | aful | mjan | mthe | pabyssi |
| Total residues | 7687386 | 2973530 | 638684 | 662214 | 480086 | 526546 | 535767 |
| Total coverage | 780323 | 379345 | 110547 | 162470 | 104799 | 116705 | 126282 |
| Percentage covered | 10.15 | 12.76 | 17.31 | 24.53 | 21.83 | 22.16 | 23.57 |
| Remaining residues | 6907063 | 2594185 | 528137 | 499744 | 375287 | 409841 | 409485 |
| Potential extra domains | 69070.6 | 25941.9 | 5281.37 | 4997.44 | 3752.87 | 4098.41 | 4094.85 |
| Genes | 16315 | 6284 | 2694 | 2388 | 1704 | 1855 | 1764 |
| Domains assigned | 7438 | 3259 | 871 | 1388 | 875 | 986 | 1022 |
| No. of genes with assignment | 3960 | 1897 | 512 | 799 | 538 | 610 | 617 |
| Percent of genes assigned | 24.27 | 30.19 | 19.01 | 33.46 | 31.57 | 32.88 | 34.98 |
| Organism | Pyro | aquae | bbur | bsub | Cjej | cpneu | cpneuA |
| Total residues | 568465 | 482512 | 282455 | 1216011 | 508329 | 361654 | 362202 |
| Total coverage | 118997 | 124311 | 61327 | 313853 | 120715 | 72247 | 72085 |
| Percentage covered | 20.93 | 25.76 | 21.71 | 25.81 | 23.75 | 19.98 | 19.90 |
| Remaining residues | 449468 | 358201 | 221128 | 902158 | 387614 | 289407 | 290117 |
| Potential extra domains | 4494.68 | 3582.01 | 2211.28 | 9021.58 | 3876.14 | 2894.07 | 2901.17 |
| Genes | 2062 | 1522 | 825 | 4072 | 1619 | 1051 | 1067 |
| Domains assigned | 961 | 1052 | 514 | 2660 | 993 | 597 | 595 |
| No. of genes with assignment | 574 | 606 | 290 | 1493 | 588 | 335 | 333 |
| Percent of genes assigned | 27.84 | 39.82 | 35.15 | 36.67 | 36.32 | 31.87 | 31.21 |
| Organism | Ctra | dra1 | ecoli | hinf | hpyl | hpyl99 | mgen |
| Total residues | 312177 | 777034 | 1358281 | 520535 | 495345 | 493679 | 174922 |
| Total coverage | 68776 | 181767 | 341229 | 147433 | 101455 | 101180 | 42767 |
| Percentage covered | 22.03 | 23.39 | 25.12 | 28.32 | 20.48 | 20.50 | 24.45 |
| Remaining residues | 243401 | 595267 | 1017052 | 373102 | 393890 | 392499 | 132155 |
| Potential extra domains | 2434.01 | 5952.67 | 10170.5 | 3731.02 | 3938.9 | 3924.99 | 1321.55 |
| Genes | 894 | 2577 | 4266 | 1694 | 1523 | 1482 | 479 |
| Domains assigned | 581 | 1518 | 2677 | 1200 | 803 | 801 | 353 |
| No. of genes with assignment | 322 | 890 | 1597 | 683 | 473 | 475 | 196 |
| Percent of genes assigned | 36.02 | 34.54 | 37.44 | 40.32 | 31.06 | 32.05 | 40.92 |
| Organism | Mpneu | mtub | nmenA | paer | rpxx | Synecho | tmar |
| Total residues | 237564 | 1329160 | 584613 | 1859257 | 278955 | 1032549 | 580647 |
| Total coverage | 45848 | 307541 | 138067 | 458736 | 70406 | 222185 | 144015 |
| Percentage covered | 19.30 | 23.14 | 23.62 | 24.67 | 25.24 | 21.52 | 24.80 |
| Remaining residues | 191716 | 1021619 | 446546 | 1400521 | 208549 | 810364 | 436632 |
| Potential extra domains | 1917.16 | 10216.2 | 4465.46 | 14005.2 | 2085.49 | 8103.64 | 4366.32 |
| Genes | 674 | 3915 | 2026 | 5557 | 831 | 3151 | 1813 |
| Domains assigned | 369 | 2579 | 1144 | 3910 | 580 | 1893 | 1181 |
| No. of genes with assignment | 208 | 1440 | 673 | 2212 | 326 | 1112 | 675 |
| Percent of genes assigned | 30.86 | 36.78 | 33.22 | 39.81 | 39.23 | 35.29 | 37.23 |
| Organism | Tpal | uure | vcho1 | xfas | |||
| Total residues | 349767 | 227646 | 855150 | 738838 | |||
| Total coverage | 69848 | 38947 | 208440 | 164002 | |||
| Percentage covered | 19.97 | 17.11 | 24.37 | 22.20 | |||
| Remaining residues | 279919 | 188699 | 646710 | 574836 | |||
| Potential extra domains | 2799.19 | 1886.99 | 6467.1 | 5748.36 | |||
| Genes | 1007 | 609 | 2593 | 2669 | |||
| Domains assigned | 598 | 330 | 1756 | 1320 | |||
| No. of genes with assignment | 334 | 194 | 969 | 784 | |||
| Percent of genes assigned | 33.17 | 31.86 | 37.37 | 29.37 |
The first of the rows gives the total number of residues within an organism's genes available for structural assignment. The next rows give the number of residues that have a structural assignment and percentage of residues that have an assignment. To complement this the amount of residues left to annotate can provide a crude estimate of how many extra structural domains may be present. This was simply calculated by dividing the remaining residues by a typical domain length of 100 residues (Pearl et al. 2001). The next rows quote the number of genes in the organism, the number of structural domains that have been assigned, and the number of genes that have one or more structural assignments. Finally all of this is summarized as a percentage of genes that have one or more structural assignments.
celeg: Caenorhabditis elegans; sacc: Saccharomyces cerevisiae; aero: Aeropyrum pernix; aful: Archeoglobus fulgidus; mjan: Methanococcus jannaschii; mthe: Methanobacterium thermoautotrophicum; pabyssi: Pyrococcus abyssi; pyro: Pyrococcus horikoshii; aquae: Aquifex aeolicus; bbur: borrelia burgdoferi; bsub: bacillus subtillus; cjej: Campylobacter jejuni; cpneu: Chlamydia pneumonia; cpneuA: Chlamydophilia pneumoniae; ctra: Chlamydia trachomatis; dra1: Deinococcus radiodurrans; ecoli: Escherichia coli; hinf: Haemophilus influenzae; hpyl: Helicobacter pylori; hpyl99: Helicobacter pylori J99; mgen: Mycoplasma genitalium; mpneu: Mycoplasma pneumoniae; mtub: Mycobacterium tuberculosis; nmenA: Neisseria meningitidis; paer: Pseudomonas aeruginosa; rpxx: Rickettssia prowazekii; syencho: Synechocystis PCC86803; tmar: Thermotoga maritima; tpal: Treponema pallidum; uure: Ureaplasma urealyticum; vchol: Vibrio cholerae; xfas: Xylella fastidiosa.