Table 4.
Response prediction gene lists.
| Symbol | Genbank accession | Unigene cluster ID | All | Low | Mid | High | Name |
| ZNF146 | NM_007145 | Hs.444223 | 100 | 100 | 100 | 0 | Zinc finger protein 146 |
| RFC3 | CR749565 | Hs.115474 | 100 | 12 | 100 | 0 | Replication factor C (activator 1) 3, 38kDa |
| DLD | NM_000108 | Hs.74635 | 100 | 4 | 100 | 0 | Dihydrolipoamide dehydrogenase |
| EIF3S8 | NM_003752 | Hs.534402 | 0 | 100 | 58 | 0 | Eukaryotic translation initiation factor 3, subunit 8 |
| SOD1 | BF131654 | Hs.443914 | 0 | 91 | 25 | 0 | Superoxide dismutase 1, soluble (amyotrophic lateral sclerosis 1 (adult)) |
| PBEF1 | NM_005746 | Hs.293464 | 25 | 0 | 0 | 88 | Pre-B-cell colony enhancing factor 1 |
| CD9 | AK025016 | Hs.387579 | 0 | 100 | 0 | 0 | CD9 antigen (p24) |
| TCEB1 | NM_005648 | Hs.435169 | 0 | 100 | 0 | 0 | Transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) |
| IGFBP4 | CR603382 | Hs.1516 | 0 | 0 | 100 | 0 | Insulin-like growth factor binding protein 4 |
| STMN1 | BX647885 | Hs.209983 | 0 | 0 | 100 | 0 | Stathmin 1/oncoprotein 18 |
| NDRG1 | AK124709 | Hs.318567 | 0 | 0 | 0 | 100 | N-myc downstream regulated gene 1 |
| PAM | NM_000919 | Hs.352733 | 0 | 0 | 0 | 100 | Peptidylglycine alpha-amidating monooxygenase |
| ARHE | X97758 | Hs.6838 | 20 | 0 | 0 | 76 | Ras homolog gene family, member E |
| MAPK6 | NM_002748 | Hs.271980 | 95 | 0 | 0 | 0 | Mitogen-activated protein kinase 6 |
| SFRS11 | BX640645 | Hs.443458 | 0 | 91 | 0 | 0 | Splicing factor, arginine/serine-rich 11 |
| TESK1 | BC038448 | Hs.79358 | 79 | 0 | 0 | 0 | Testis-specific kinase 1 |
| THRAP3 | NM_005119 | Hs.250113 | 60 | 0 | 0 | 0 | Thyroid hormone receptor associated protein 3 |
| PTPN7 | AK127214 | Hs.402773 | 55 | 0 | 0 | 0 | Protein tyrosine phosphatase, non-receptor type 7 |
| PSMC6 | AK127456 | Hs.156171 | 0 | 41 | 0 | 0 | Proteasome (prosome, macropain) 26S subunit, ATPase, 6 |
| CD47 | NM_001777 | Hs.446414 | 0 | 0 | 37 | 0 | CD47 antigen (Rh-related antigen, integrin-associated signal transducer) |
| REST | NM_005612 | Hs.401145 | 23 | 0 | 12 | 0 | RE1-silencing transcription factor |
| PCNA | NM_002592 | Hs.78996 | 0 | 0 | 33 | 0 | Proliferating cell nuclear antigen |
| CTPS | BC009408 | Hs.251871 | 0 | 0 | 16 | 0 | CTP synthase |
| ARL6IP | BC010281 | Hs.75249 | 0 | 12 | 0 | 0 | ADP-ribosylation factor-like 6 interacting protein |
| CDH1 | NM_004360 | Hs.194657 | 0 | 12 | 0 | 0 | Cadherin 1, type 1, E-cadherin (epithelial) |
| ITSN1 | AF064244 | Hs.66392 | 0 | 0 | 0 | 12 | Intersectin 1 (SH3 domain protein) |
| GATA4 | NM_002052 | Hs.243987 | 9 | 0 | 0 | 0 | GATA binding protein 4 |
| SNRPB | BM564070 | Hs.83753 | 0 | 8 | 0 | 0 | Small nuclear ribonucleoprotein polypeptides B and B1 |
| DLG7 | NM_014750 | Hs.77695 | 0 | 0 | 8 | 0 | Discs, large homolog 7 (Drosophila) |
| KCNN3 | BX649146 | Hs.89230 | 0 | 0 | 0 | 8 | Potassium intermediate/small conductance calcium-activated channel |
The genes used in the prediction for the full set of samples ('all') and for each of the subsets (defined in Table 3). For each subset, the genes listed are those used in the minimum error rate predictor (except for the 'all' category, for which a seven-gene predictor was selected to observe a longer gene list to allow comparison with the other gene lists). The 'support' given for each gene refers to the percentage of the leave-one-out cross-validations in which the gene was used. Only genes that attain cumulative support across 'all' and the subsets of at least 8% are shown.