Table 1.
Comparison of ReAnoCDS05 and Ensembl
| ReAnoCDS05 | Ensembl | |
| Total CDSs | 31,254 | 16,148 |
| Total exons | 155,680 | 58,579 |
| Average exons per CDS | 4.98 | 3.62 |
| CDS completion rate* | 96% | 37% |
| CDSs overlapped by cDNA pair contigs† | 1,885 | 2,257 |
| CDSs perfectly matched to cDNA pair contigs† | 752 | 672 |
| cDNA pair contigs not overlapping any CDSs† | 1% | 8% |
| Specificity (nucleotide)‡ | 0.96 | 0.99 |
| Sensitivity (overall)§ | 99% | 92% |
| Sensitivity (perfect)¶ | 45% | 30% |
| Protein hits yielded by MS peptides | 4,737 | 1,413 |
| MS peptide missing rate¥ | 12% | 62% |
*Proportion of CDSs with start and stop codon. †Paired end sequences of full-length cDNAs from [7]. ‡Calculation for ReAnoCDS05 described in Materials and methods, Ensembl value from [18]. §Proportion of cDNA pair contigs overlapping a CDS. ¶Proportion of overlapped CDSs precisely matching cDNA pair contig boundaries. ¥Proportion of mass spectrometry (MS) peptides failing to hit any protein in database.