Table 2.
Conservation of RE1s between human and mouse CACNA1 family genes
| Gene | Human Ensembl ID | Human RE1 score | RE1 ID | TE? | Mouse Ensembl ID | Mouse RE1 score | RE1 ID | TE? |
|---|---|---|---|---|---|---|---|---|
| CACNA1A | ENSG00000141837 | 0.96 | hum39611 | No | ENSMUSG00000034656 | 0.92 | mus16973 | No |
| 0.97 | hum39604 | No | 0.95 | mus16983 | No | |||
| — | — | — | 0.94 | mus16981 | No | |||
| CACNA1B | ENSG00000148408 | 0.92 | hum23208 | No | ENSMUSG00000004113 | — | — | — |
| 0.97 | hum23209 | No | <0.83 | — | — | |||
| 0.98 | hum23210 | No | 0.96 | mus2523 | No | |||
| CACNA1D | ENSG00000157388 | 0.92 | hum8374 | No | ENSMUSG00000015968 | <0.83 | — | — |
| CACNA1H | ENSG00000196557 | 0.97 | hum33973 | No | ENSMUSG00000024112 | 0.98 | mus31150 | No |
| CACNA1G | ENSG00000006283 | 0.93 | hum37140 | LINE2 | ENSMUSG00000020866 | <0.83 | — | — |
| CACNA2D2 | ENSG00000007402 | 0.95 | hum8255 | No | ENSMUSG00000010066 | 0.88 | mus19450 | No |
| 0.91 | hum8267 | No | 0.93 | mus19435 | No | |||
| CACNA2D3 | ENSG00000157445 | 0.97 | hum8379 | No | ENSMUSG00000021991 | 0.96 | mus27091 | No |
| CACNB2 | ENSG00000165995 | 0.93 | hum23514 | Alu | ENSMUSG00000057914 | — | — | — |
| CACNG2 | ENSG00000166862 | 0.93 | hum43594 | No | ENSMUSG00000019146 | 0.94 | mus29100 | No |
| — | — | — | 0.93 | mus29059 | No | |||
| CACNG7 | ENSG00000105605 | 0.93 | hum40713 | Alu | ENSMUSG00000069806 | — | — | — |
Dash (—) indicates no aligned sequence exists.
TE?: The identity of transposable elements overlapping or in the immediate flanking region of RE1s is indicated.