Table 3.
Target genes of duplicated RE1s
| Ensembl ID | Description | RE1 ID | Element | EMSA lanea | Conserved? |
|---|---|---|---|---|---|
| No mouse homologue exists | |||||
| ENSG00000196164 | Q96HX1_HUMAN | hum21648 | LINE2 | H | m |
| ENSG00000101825 | Adlican | hum44251 | Not rep. | B | m |
| ENSG00000185164 | Nodal modulator 2 precursor (pM5 protein 2) | hum34541 | LINE2 | N/A | m |
| ENSG00000154608 | KIAA0470L protein | hum11432 | LINE2 | E | c |
| ENSG00000189281 | PREDICTED: hypothetical protein XP_375668 | hum11438 | LINE2 | E | c |
| ENSG00000182053 | PREDICTED: similar to tripartite motif-containing 51 | hum26460 | Not rep. | N/A | m |
| ENSG00000182111 | PREDICTED: similar to Zinc finger protein 479 | hum17621 | LINE2 | F | c, d |
| ENSG00000197123 | Zinc finger protein 679 | hum17654 | Not rep. | N/A | m |
| ENSG00000163040 | NP_620125.1 | hum6034 | LINE1 | D | c |
| Mouse homologue has no RE1 | |||||
| ENSG00000106078 | Cordon-bleu homologue | hum17527 | LINE2 | N/A | c |
| ENSG00000105198 | Galactoside-binding soluble lectin 13 (PP13) | hum40246 | Not rep. | N/A | c |
| ENSG00000006659 | Placental protein 13-like (CLC2) | hum40243 | Not rep. | N/A | c |
| ENSG00000184330 | S100 calcium-binding protein A7-like 1 | hum2528 | Alu | C | c |
| ENSG00000143556 | S100 calcium-binding protein A7 (Psoriasin) | hum2515 | Alu | N/A | c |
| ENSG00000196396 | Tyrosine-protein phosphatase, non-receptor type 1 (PTP-1B) | hum41830 | LINE2 | N/A | c, d |
| Mouse homologue has RE1 | |||||
| ENSG00000152953 | STK32B | hum10317 | Not rep. | A | c, d |
| ENSG00000007171 | NOS2 | hum36473 | LINE2 | I | m |
Not rep., flanking sequence has no repetitive characteristics; m, sequence can be aligned to multiple species; c, sequence can be aligned to chimp; d, sequence can be aligned to dog.
aSee Figure 5C.