Table 1.
Species | Accession Number | Chromosome location | Gene length (Kb) | GCgene | GCcoding | ||
GC1 | GC2 | GC3 | |||||
human (Homo sapiens) | ENSG00000072506 | chromosome X (p11.2) | 3.11 | 52 | 66 | 46 | 63 |
chimpanzee (Pan troglodytes) | ENSPTRG00000021929 | chromosome X | 3.12 | 52 | 66 | 46 | 63 |
orangutan (Pongo Pygmaeus) | a | - | 3.11 | 52 | 66 | 45 | 63 |
rhesus monkey (Macaca mulatta) | ENSMMUG00000009296 | geneScaffold_500 | 3.17 | 51 | 66 | 45 | 65 |
rat (Rattus norvegicus) | ENSRNOG00000003049 | chromosome X | 2.45 | 48 | 64 | 44 | 52 |
mouse (Mus musculus) | ENSMUSG00000025260 | chromosome X | 2.56 | 49 | 64 | 44 | 50 |
dog (Canis familiaris)b | ENSCAFG00000016277 | chromosome X | 2.29 | 52 | 66 | 44 | 61 |
cat (Felis catus)c | a | - | 2.30 | 51 | 66 | 44 | 60 |
cow (Bos Taurus) | ENSBTAG00000017779 | chromosome X | 2.32 | 52 | 64 | 46 | 62 |
pig (Sus scrofa)d | TC220713 | - | - | - | 66 | 45 | 66 |
opossum (Monodelphis domestica)e | ENSMODG00000020889 | scaffold_255 | 1.80 | 55 | 66 | 46 | 64 |
western clawed frog (Xenopus tropicalis)f | ENSXETG00000007721/TC2334 | scaffold_154 | 3.17 | 44 | 63 | 43 | 48 |
african clawed frog (Xenopus laevis)d | TC274805 | - | - | - | 62 | 44 | 48 |
zebrafish (Danio rerio) | ENSDARG00000017781 | chromosome 18 | 9.38 | 33 | 62 | 47 | 49 |
Fugu (Takifugu rubripes)c | SINFRUG00000123807 | scaffold_2159 | 1.81 | 51 | 66 | 47 | 69 |
Tetraodon (Tetraodon nigroviridis) | GSTENG00023338001 | chromosome 9 | 1.73 | 57 | 67 | 48 | 81 |
fruitfly (Drosophila melanogaster) | CG7113 | chromosome X | 1.61 | 51 | 62 | 44 | 83 |
mosquito (Anopheles gambiae)c | ENSANGG00000012647 | chromosome 2R | 0.77 | 60 | 67 | 42 | 73 |
honeybee (Apis mellifera) | ENSAPMG00000015843 | group11 | 1.49 | 18 | 54 | 38 | 12 |
Caenorhabditis elegans | F01G4.2 | chromosome IV | 2.50 | 34 | 63 | 43 | 35 |
Caenorhabditis briggsaec | CBG06017 | assembly cb25.fpc0143 | 1.13 | 43 | 61 | 43 | 40 |
a These gene sequences were manually inferred based on species specific WGS sequences retrieved from a tblastn search to NCBI trace archive: orangutan – ti812046525, ti812049734, ti848517349, ti718725185; cat – ti651599423, ti653340876, ti825822144, ti646417680, ti818302482, ti826254688
b The gene sequence does not include the 5' UTR sequence
c The gene sequences does not include the UTR sequences
d No information available about intronic sequences
e The gene sequence does not include the first exon, first intron and UTRs sequences
f The gene sequence does not include the first intron and UTR sequences