Table 2.

Indel positions in the chromosomes of B. garinii PBi and B. afzelii PKo in respect to the B. burgdorferi B31 genome. Only indels larger than 40 bases are listed. Positions reflect start sites on the B. burgdorferi genome. Asterisks denote indels where adjacent parts were combined for clarity. Highly variable regions are bold. Please note that no ancestral state can be inferred from the table.

Insertion or deletion in respect to the B. burgdorferi B31 genome	B. afzelii		B. garinii		Features in affected region
	length	start	length	start
deletion	110	137904	390	138010
deletion	160	213176	183	213184	lmp1
deletion	168	213392	656	213578*	lmp1
deletion	109	228785
deletion			150	248210
insertion	41	318180	44	318180
insertion	3400	394080	1900	393751	bmp
insertion	2500	443408*	2500	443413*	ori
insertion	46	476276	55	476260
deletion	183	492057	55	492057
deletion	124	493983
deletion	114	557027	181	556952
insertion			200	782940
deletion	87	788148
deletion	144	792943	140	792945
insertion	330	839080
deletion	332	844698
insertion			40	870038