Table 2. Hybridization dataa.
ODN | ODN / RNA-22 | ||||||
---|---|---|---|---|---|---|---|
0.01 M NaCl Tm (°C) | –ΔG°37 kcal/mol | Δ Tm1b (°C) | ΔTm1/unitc (°C) | Δ Tm2d (°C) | 1 M NaCl Tm (°C) | ΔTm3e (°C) | |
14 | 33.8 ± 0.4 | 11.5 | 56.0 | +22.2 | |||
15-II | 36.6 ± 0.3 | 12.7 | +2.8 | +2.8 | – | ||
16-II | 34.8 ± 0.4 | 12.5 | +1.0 | +1.0 | – | ||
17-II | 37.5 ± 0.1 | 12.4 | +3.7 | +3.7 | – | ||
18-II | 37.9 ± 0.4 | 12.0 | +4.1 | +2.1 | 57.1 | +19.2 | |
19-II | 43.0 ± 0.1 | 14.7 | +9.2 | +3.1 | 59.3 | +16.3 | |
20-II | 44.4 ± 0.3 | 14.6 | +10.6 | +2.7 | 58.2 | +13.8 | |
21-II | 47.2 ± 0.2 | 14.9 | +13.4 | +2.7 | 58.8 | +11.6 | |
21-V | 30.4 | –3.4 | 49.5 | +19.1 | |||
15-III | 36.3 ± 0.3 | 12.9 | +2.5 | +2.5 | –0.3 | – | |
16-III | 34.2 ± 0.0 | 11.2 | +0.4 | +0.4 | –0.6 | – | |
17-III | 37.2 ± 0.2 | 12.2 | +3.4 | +3.4 | –0.3 | – | |
18-III | 38.1 ± 0.0 | 12.4 | +4.3 | +2.2 | +0.2 | 58.1 | +20.0 |
19-III | 45.5 ± 0.1 | 14.5 | +11.7 | +3.9 | +2.5 | 61.2 | +15.7 |
20-III | 47.0 ± 0.0 | 15.4 | +13.2 | +3.3 | +2.6 | 60.9 | +13.9 |
21-III | 49.0 ± 0.4 | 16.5 | +15.2 | +3.0 | +1.8 | 60.9 | +11.9 |
21-VI | 30.6 | –3.2 | 50.9 | +20.3 |
aExperimental conditions are described in Materials and Methods.
bΔTm1 = Tm (each ODN) – Tm (control ODN 14).
cΔTm1/unit = Tm1 (each ODN)/the number of modification.
dΔTm2 = Tm (each ODN containing D) – Tm (each ODN containing the same number of H).
eΔTm3 = Tm (1 M NaCl) – Tm (0.01 M NaCl).