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Mapping of MPSS mRNA and Small RNA Signatures to the ∼2.3-Mb Cen3 Virtual Contig.
Most of the single-hit MPSS mRNA signatures were mapped to regions annotated as active genes, while single-hit small RNA signatures were largely found within intergenic regions and tended to cluster to discrete loci. The distribution of small RNAs with at least two genome hits is generally correlated with that of repetitive DNA.
