TABLE 2.
Frequency of antigen-specific CD8+ T cells recognizing the PR82V76-84 and/or PR82A76-84 peptide in the HIV-1 protease genea
Patient | Amino acid at position 82 | % IFN-γ-producing CD8+ T cells
|
HLA-A2 | |
---|---|---|---|---|
PR82V76-84 | PR82A76-84 | |||
SNC | <0.050 | <0.050 | + | |
SNC | <0.050 | <0.050 | + | |
3005 | Val | <0.050 | <0.050 | − |
3085 | Val | <0.050 | <0.050 | − |
3148 | Val | <0.050 | <0.050 | − |
3152 | Val | <0.050 | <0.050 | − |
2004 | Ala | <0.050 | <0.050 | − |
3004 | Ala | <0.050 | <0.050 | − |
3025 | Ala | <0.050 | <0.050 | − |
3028 | Ala/Val | <0.050 | <0.050 | − |
3047 | Ala | <0.050 | <0.050 | − |
3062 | Ala | <0.050 | <0.050 | − |
3071 | Ala | <0.050 | <0.050 | − |
3072 | Ala | <0.050 | <0.050 | − |
3075 | Ala | <0.050 | <0.050 | − |
3102 | Ala | <0.050 | <0.050 | − |
2081 | Val | 0.166 | <0.050 | + |
3011 | Val | 0.204 | <0.050 | + |
3013 | Val | 0.070 | <0.050 | + |
3043 | Val | <0.050 | <0.050 | + |
3057 | Val | 0.056 | <0.050 | + |
3151 | Val | 0.104 | 0.075 | + |
3153 | Val | 0.280 | 0.100 | + |
3156 | Val | 0.330 | 0.180 | + |
3012 | Ala | <0.050 | <0.050 | + |
3023 | Ala | 0.130 | 0.360 | + |
3037 | Ala | <0.050 | 0.061 | + |
3040 | Ala | 0.054 | 0.123 | + |
3050 | Ala | <0.050 | <0.050 | + |
3084 | Ala/Val | <0.050 | <0.050 | + |
3088 | Ala | <0.050 | <0.050 | + |
Cells gated on IFN-γ-producing CD3+ CD8+ CD4− T cells were detected by intracellular CFC. The proportion of patients with the V82A mutation is greater in the group of HLA-A2-negative patients than in the HLA-A2-positive group, but the difference does not reach statistical significance (P = 0.17; chi square test). Levels above 0.05 with the background subtracted (mean background + 2SD = 0.05) are considered positive. SNC, seronegative control; Ala/Val, presence of viral sequences with both Ala and Val at position 82.