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(A) The RMSD of the backbone atoms of the Mlc1p-IQ2 complex (black), the Mlc1p protein (dark gray), and the IQ2 peptide (light gray) as a function of the simulation time. (B) The RMSD of the backbone atoms of the different domains of the Mlc1p protein as a function of the simulation time. The domains of the protein are defined as follows: residues 1–59 for the N-lobe (black), 60–92 for the interdomain (dark gray), and 93–148 for the C-lobe (light gray).
