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. 2006 Jul 14;91(7):2451–2463. doi: 10.1529/biophysj.106.082891

TABLE 1.

Setup of the MD simulations on B. caldolyticus cold shock protein (Bc-Csp) and B. subtilis cold shock protein B (Bs-CspB)

Proteins
Bc-Csp
Bs-CspB
PDB
1c9oA
1csp
Temperature 300 K 500 K 600 K 300 K 500 K 600 K
Protein atoms 1,020 1,020 1,020 1,014 1,014 1,014
Counterions (Na+) 2 2 2 6 6 6
Water 4,375 10,350 10,350 4,722 11,095 11,095
Total atoms 14,147 32,072 32,072 15,186 34,305 34,305
Box size (Å3) 55 × 50 × 51 77 × 71 × 72 77 × 71 × 72 55 × 50 × 55 76 × 71 × 76 76 × 71 × 76
Ensemble NTP NTV NTV NTP NTV NTV
Total time (ns) 12.000 50.699 6.00 12.00 20.043 6.00