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. 2006 May 19;91(3):912–920. doi: 10.1529/biophysj.106.086579

TABLE 1.

Exclusion of alcohols from condensed DNA arrays

DNA Alcohol λ, Å Πexcess(27Å)/Π0 ΔNw, per basepair
Na+-DNA MPD 4.0 ± 0.2 0.65 ± 0.02 42 ± 3
Co3+-DNA MPD 3.65 ± 0.35 0.46 ± 0.02 34 ± 5
Spd3+-DNA MPD 3.55 ± 0.25 0.49 ± 0.02 35 ± 4
Δ(C-O) = 3* 3.6 ± 0.2 0.41 ± 0.02 32 ± 3
Δ(C-O) = 2 3.7 ± 0.2 0.28 ± 0.02 25 ± 3
Δ(C-O) = 1 3.65 ± 0.25 0.22 ± 0.02 20 ± 3
Methanol 4.45 ± 0.5 0.13 ± 0.03 11 ± 4
Ethylene glycol 0.05 ± 0.01
Glycerol 0.00 ± 0.02
Threitol 0.95 ± 0.25 −0.10 ± 0.03
Sorbitol 1.25 ± 0.15 −0.37 ± 0.04

The data shown in Figs. 2–4 were fit to an exponential function to determine an apparent decay length and best fit amplitude at 27 Å. The total number of excess waters was determined by integrating the exponential fit for Πexcess0 from Dint = ∞ to 20.9 Å (the spacing measured for dried Spd3+-DNA arrays) using Eqs. 3 and 5 and dV = √3 l Dint dDint, where V is the water volume/basepair in the DNA phase and l is the rise/basepair assumed 3.4 Å.

*

An average of the data for 1-butanol, 2-butanol, and t-butanol.

An average of the data for 1-propanol, 2-propanol, 1,4-butanediol, and 2,3-butanediol.

An average of the data for ethanol, 1,3-propanediol, and 1,2-propanediol.